(data stored in SCRATCH zone)

SWISSPROT: C1E1U0_MICCC

ID   C1E1U0_MICCC            Unreviewed;      1178 AA.
AC   C1E1U0;
DT   26-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   26-MAY-2009, sequence version 1.
DT   30-AUG-2017, entry version 44.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000256|RuleBase:RU363031};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU363031};
GN   ORFNames=MICPUN_93697 {ECO:0000313|EMBL:ACO61798.1};
OS   Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) (Picoplanktonic
OS   green alga).
OC   Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae;
OC   Mamiellales; Mamiellaceae; Micromonas.
OX   NCBI_TaxID=296587 {ECO:0000313|EMBL:ACO61798.1, ECO:0000313|Proteomes:UP000002009};
RN   [1] {ECO:0000313|EMBL:ACO61798.1, ECO:0000313|Proteomes:UP000002009}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RCC299 / NOUM17 {ECO:0000313|Proteomes:UP000002009};
RX   PubMed=19359590; DOI=10.1126/science.1167222;
RA   Worden A.Z., Lee J.H., Mock T., Rouze P., Simmons M.P., Aerts A.L.,
RA   Allen A.E., Cuvelier M.L., Derelle E., Everett M.V., Foulon E.,
RA   Grimwood J., Gundlach H., Henrissat B., Napoli C., McDonald S.M.,
RA   Parker M.S., Rombauts S., Salamov A., Von Dassow P., Badger J.H.,
RA   Coutinho P.M., Demir E., Dubchak I., Gentemann C., Eikrem W.,
RA   Gready J.E., John U., Lanier W., Lindquist E.A., Lucas S., Mayer K.F.,
RA   Moreau H., Not F., Otillar R., Panaud O., Pangilinan J., Paulsen I.,
RA   Piegu B., Poliakov A., Robbens S., Schmutz J., Toulza E., Wyss T.,
RA   Zelensky A., Zhou K., Armbrust E.V., Bhattacharya D., Goodenough U.W.,
RA   Van de Peer Y., Grigoriev I.V.;
RT   "Green evolution and dynamic adaptations revealed by genomes of the
RT   marine picoeukaryotes Micromonas.";
RL   Science 324:268-272(2009).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
CC       of DNA into RNA using the four ribonucleoside triphosphates as
CC       substrates. {ECO:0000256|RuleBase:RU363031}.
CC   -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
CC       + RNA(n+1). {ECO:0000256|RuleBase:RU363031}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC       {ECO:0000256|RuleBase:RU000434}.
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DR   EMBL; CP001324; ACO61798.1; -; Genomic_DNA.
DR   RefSeq; XP_002500540.1; XM_002500494.1.
DR   GeneID; 8242159; -.
DR   KEGG; mis:MICPUN_93697; -.
DR   HOGENOM; HOG000222962; -.
DR   InParanoid; C1E1U0; -.
DR   KO; K03010; -.
DR   Proteomes; UP000002009; Chromosome 3.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd00653; RNA_pol_B_RPB2; 1.
DR   Gene3D; 2.40.270.10; -; 2.
DR   Gene3D; 3.90.1110.10; -; 1.
DR   InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR   InterPro; IPR007120; DNA-dir_RNA_pol_su2_6.
DR   InterPro; IPR007121; RNA_pol_bsu_CS.
DR   InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR   InterPro; IPR007642; RNA_pol_Rpb2_2.
DR   InterPro; IPR007645; RNA_pol_Rpb2_3.
DR   InterPro; IPR007646; RNA_pol_Rpb2_4.
DR   InterPro; IPR007647; RNA_pol_Rpb2_5.
DR   InterPro; IPR007641; RNA_pol_Rpb2_7.
DR   PANTHER; PTHR20856; PTHR20856; 1.
DR   Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR   Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR   Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR   Pfam; PF04566; RNA_pol_Rpb2_4; 1.
DR   Pfam; PF04567; RNA_pol_Rpb2_5; 1.
DR   Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR   Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR   PROSITE; PS01166; RNA_POL_BETA; 1.
PE   3: Inferred from homology;
DR   PRODOM; C1E1U0.
DR   SWISS-2DPAGE; C1E1U0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002009};
KW   DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU363031};
KW   Nucleotidyltransferase {ECO:0000256|RuleBase:RU363031};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002009};
KW   Transcription {ECO:0000256|RuleBase:RU363031};
KW   Transferase {ECO:0000256|RuleBase:RU363031}.
FT   DOMAIN       31    446       RNA_pol_Rpb2_1. {ECO:0000259|Pfam:
FT                                PF04563}.
FT   DOMAIN      209    398       RNA_pol_Rpb2_2. {ECO:0000259|Pfam:
FT                                PF04561}.
FT   DOMAIN      471    535       RNA_pol_Rpb2_3. {ECO:0000259|Pfam:
FT                                PF04565}.
FT   DOMAIN      570    631       RNA_pol_Rpb2_4. {ECO:0000259|Pfam:
FT                                PF04566}.
FT   DOMAIN      655    707       RNA_pol_Rpb2_5. {ECO:0000259|Pfam:
FT                                PF04567}.
FT   DOMAIN      714   1084       RNA_pol_Rpb2_6. {ECO:0000259|Pfam:
FT                                PF00562}.
FT   DOMAIN     1086   1177       RNA_pol_Rpb2_7. {ECO:0000259|Pfam:
FT                                PF04560}.
SQ   SEQUENCE   1178 AA;  132928 MW;  E8DDD04321ECBD1A CRC64;
     MSEENVAVEE EEEIGQEDAW TVISSFFEEK GLARQQLDSF NEFIQHTMQE IVDEMSDFTI
     EPEEQHMPGE EADGKGKKKY KVEFKQIYLS KPMVTEADGM TSTLFPKEAR LRNLTYSAPL
     YIDMAKSTIT TTDEIDATTG KYIETIDTEE YPKVFFGKVP IMLRSQYCSL HDHTDKELTE
     LGECPYDEGG YFIINGSEKV LIAQEKMSTN HVYVFEKRQP SKYMWVAECR SSPESGARAA
     SSCMARLCHA PGTKDEAGVI SVTIPYIRTE IPLFVVFRAL GFVADKDILE HLVYDFEDHE
     MMQLLRNSIE EAQVIQSQDV ALDFIGKRGS AVGVTRPKRI QYAREILQKE LLPHVGVNEG
     CETKKAYFLG YIVNRLLLCA LGRKKEDDRD HFGNKRMDLS GPLIAMLFRQ LFRKVTKDVR
     LYSQRCIDSG KDIQLTLAVK AKTITSGLKY SLATGNWGAQ GAQDIRAGVS QVLNRLSFSS
     TLSHLRRLNS PIGREGKLAK PRQLHNSHWG MVCPAETPEG QAVGLVKNLS LMCLVSVGSP
     SAPLLEFLEE WSMENLEEIS PSVIVNATKI FVNGVWVGVH REPAQLVQTL RNLRRKLDIT
     IEVGVVHDIA LRELRLYTDY GRCIRPLFIV EDNHLVIKKK DIQMLYEKEI TGYTWNDLVA
     TGCIEYVDTE EEETTMIAMT IDELVGQRIN AEPGGVKHMY THCEIHPSMI LGICASIIPF
     PDHNQSPRNT YQSAMGKQAM GMYVTNFQIR MDTLAYVLFY PQKPLVTTRA MEHLHFRELP
     AGVNVVVGIM CYTGYNQEDS VIMNQSSIDR GLFRSIFYRS FKDEEKKQGS LTKEELERPS
     RDTTLGMRHG TYDKLDDDGL ICPGTRVSGE DIIIGKTSPL PEDDPSAVSK RFTKRDCSTG
     MKNSETGIID QVLLTTNDQG LRFVKIRVRS CRTPQVGDKF SSRHGQKGTI GMTYTQEDMP
     FTCEGIVPDI IVNPHAIPSR MTIGQLVECL MGKVAAMMGK EGDATPFTPV TVESISDMLH
     MCGYQKRGNE VMYNGHTGRK LEAKIFLGPT YYQRLKHMVD DKIHSRGRGP VQILTRQPME
     GRSRDGGLRF GEMERDCIIS HGAAAFLKER LMDQSDAYRI HVCETCGLIA VANLKNQTFE
     CCKNPSERTK VVQVMMPYAC KLLFQELMSM AVAPRLVT
//

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