(data stored in SCRATCH zone)

SWISSPROT: C5B728_EDWI9

ID   C5B728_EDWI9            Unreviewed;       491 AA.
AC   C5B728;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   07-JUN-2017, entry version 47.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   OrderedLocusNames=NT01EI_0573 {ECO:0000313|EMBL:ACR67802.1};
OS   Edwardsiella ictaluri (strain 93-146).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Hafniaceae; Edwardsiella.
OX   NCBI_TaxID=634503 {ECO:0000313|EMBL:ACR67802.1, ECO:0000313|Proteomes:UP000001485};
RN   [1] {ECO:0000313|Proteomes:UP000001485}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=93-146 {ECO:0000313|Proteomes:UP000001485};
RA   Williams M.L., Gillaspy A.F., Dyer D.W., Thune R.L., Waldbieser G.C.,
RA   Schuster S.C., Gipson J., Zaitshik J., Landry C., Lawrence M.L.;
RT   "Complete genome sequence of Edwardsiella ictaluri 93-146.";
RL   Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|PIRNR:PIRNR000774}.
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DR   EMBL; CP001600; ACR67802.1; -; Genomic_DNA.
DR   RefSeq; WP_015870001.1; NC_012779.2.
DR   STRING; 634503.NT01EI_0573; -.
DR   EnsemblBacteria; ACR67802; ACR67802; NT01EI_0573.
DR   GeneID; 7960341; -.
DR   KEGG; eic:NT01EI_0573; -.
DR   PATRIC; fig|634503.3.peg.518; -.
DR   eggNOG; ENOG4105DTW; Bacteria.
DR   eggNOG; COG1508; LUCA.
DR   HOGENOM; HOG000071905; -.
DR   KO; K03092; -.
DR   OMA; VTTQKFM; -.
DR   OrthoDB; POG091H02EW; -.
DR   Proteomes; UP000001485; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   PANTHER; PTHR32248; PTHR32248; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
DR   PRODOM; C5B728.
DR   SWISS-2DPAGE; C5B728.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001485};
KW   DNA-binding {ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000774};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001485};
KW   Sigma factor {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN      129    317       Sigma54_CBD. {ECO:0000259|Pfam:PF04963}.
FT   DOMAIN      331    489       Sigma54_DBD. {ECO:0000259|Pfam:PF04552}.
SQ   SEQUENCE   491 AA;  55436 MW;  C466B9EDBBCCC1FA CRC64;
     MKQGLQLRLS QQLTMTPQLQ QAIRLLQLST LELQQEIQQA LESNPLLEQL EPNDEADGDS
     ADDGRQQDEA DVRDRDDDEP LDTRDALEQR EMPDELPLDA SWDEIYTAGT PSGTGTDYHD
     DELPVFQGET TQTLQDYLMW QVELTPFSEM DLAIATAIVD AVDDTGYLTA SLEEILESLG
     DEHALPEEVE AVLKRIQRFD PIGVAARDLR DCLLVQLSQF APDTPYLNEA HSIVDRHLDL
     LGNHDFRNLM RSTKLKEEVL KEAMQLIQSL DPRPGLSINT GDSDYVIPDV LVHKRQGRWV
     VELNQDSVPR LHINQRYAAL GNQARSDSDS QFIRSNLQEA KWLIKSLESR NDTLLKVSRC
     IVEQQQAFFE HGAESMKPMV LADIAQQVEM HESTISRVTT QKFLHSPRGI FELKYFFSSH
     VNTENGGEAS STAIRALVKK LIAAENPAKP LSDSKLTTLL ADQGIMVARR TVAKYRESLF
     IPPSNQRKQL V
//

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