(data stored in SCRATCH zone)

SWISSPROT: C6AYB6_RHILS

ID   C6AYB6_RHILS            Unreviewed;       171 AA.
AC   C6AYB6;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   01-SEP-2009, sequence version 1.
DT   07-JUN-2017, entry version 55.
DE   RecName: Full=Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00349114};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00349018};
GN   Name=ybeY {ECO:0000256|HAMAP-Rule:MF_00009};
GN   OrderedLocusNames=Rleg_0029 {ECO:0000313|EMBL:ACS54340.1};
OS   Rhizobium leguminosarum bv. trifolii (strain WSM1325).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
OX   NCBI_TaxID=395491 {ECO:0000313|EMBL:ACS54340.1, ECO:0000313|Proteomes:UP000002256};
RN   [1] {ECO:0000313|EMBL:ACS54340.1, ECO:0000313|Proteomes:UP000002256}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=WSM1325 {ECO:0000313|EMBL:ACS54340.1,
RC   ECO:0000313|Proteomes:UP000002256};
RX   PubMed=21304718;
RA   Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K.,
RA   Tiwari R., Copeland A., Nolan M., Han C., Brettin T., Land M.,
RA   Ovchinikova G., Ivanova N., Mavromatis K., Markowitz V., Kyrpides N.,
RA   Melino V., Denton M., Yates R., Howieson J.;
RT   "Complete genome sequence of Rhizobium leguminosarum bv. trifolii
RT   strain WSM1325, an effective microsymbiont of annual Mediterranean
RT   clovers.";
RL   Stand. Genomic Sci. 2:347-356(2010).
CC   -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved
CC       in late-stage 70S ribosome quality control and in maturation of
CC       the 3' terminus of the 16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00009,
CC       ECO:0000256|SAAS:SAAS00349030}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000256|HAMAP-
CC         Rule:MF_00009};
CC       Note=Binds 1 zinc ion. {ECO:0000256|HAMAP-Rule:MF_00009};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009,
CC       ECO:0000256|SAAS:SAAS00349021}.
CC   -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC       {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00543484}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001622; ACS54340.1; -; Genomic_DNA.
DR   RefSeq; WP_012755778.1; NC_012850.1.
DR   ProteinModelPortal; C6AYB6; -.
DR   EnsemblBacteria; ACS54340; ACS54340; Rleg_0029.
DR   KEGG; rlg:Rleg_0029; -.
DR   HOGENOM; HOG000132869; -.
DR   KO; K07042; -.
DR   OMA; LGYDHMN; -.
DR   OrthoDB; POG091H029S; -.
DR   Proteomes; UP000002256; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.40.390.30; -; 1.
DR   HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR   InterPro; IPR023091; MetalPrtase_cat_dom_prd.
DR   InterPro; IPR002036; YbeY.
DR   InterPro; IPR020549; YbeY_CS.
DR   Pfam; PF02130; UPF0054; 1.
DR   TIGRFAMs; TIGR00043; TIGR00043; 1.
DR   PROSITE; PS01306; UPF0054; 1.
PE   3: Inferred from homology;
DR   PRODOM; C6AYB6.
DR   SWISS-2DPAGE; C6AYB6.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002256};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00023230};
KW   Endonuclease {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00426922};
KW   Hydrolase {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00023145};
KW   Metal-binding {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00023229};
KW   Nuclease {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00023097};
KW   Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00023084};
KW   rRNA processing {ECO:0000256|HAMAP-Rule:MF_00009,
KW   ECO:0000256|SAAS:SAAS00426904};
KW   Zinc {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023075}.
FT   COILED       95    122       {ECO:0000256|SAM:Coils}.
FT   METAL       126    126       Zinc; catalytic. {ECO:0000256|HAMAP-Rule:
FT                                MF_00009}.
FT   METAL       130    130       Zinc; catalytic. {ECO:0000256|HAMAP-Rule:
FT                                MF_00009}.
FT   METAL       136    136       Zinc; catalytic. {ECO:0000256|HAMAP-Rule:
FT                                MF_00009}.
SQ   SEQUENCE   171 AA;  18962 MW;  223D9BDED01620B1 CRC64;
     MAELDIQISV EDIGWPGEET LLSFCERVLG AAVVYLSDSE KQPFPTLPPE VSLVFTDDAS
     IQDINAEWRG KDKATNVLSF PAFPVQPGKM PGPMLGDIII ARETLEREAA ELEKSFDDHL
     THLLVHGFLH LLGYDHMNSA EAEIMEGLET RILAQLGLSD PYEGQDLKME P
//

If you have problems or comments...

PBIL Back to PBIL home page