(data stored in SCRATCH zone)

SWISSPROT: C7QHG3_CATAD

ID   C7QHG3_CATAD            Unreviewed;       170 AA.
AC   C7QHG3;
DT   13-OCT-2009, integrated into UniProtKB/TrEMBL.
DT   13-OCT-2009, sequence version 1.
DT   07-JUN-2017, entry version 54.
DE   SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU69102.1};
GN   OrderedLocusNames=Caci_0147 {ECO:0000313|EMBL:ACU69102.1};
OS   Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC
OS   102108 / JCM 14897).
OC   Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae;
OC   Catenulispora.
OX   NCBI_TaxID=479433 {ECO:0000313|EMBL:ACU69102.1, ECO:0000313|Proteomes:UP000000851};
RN   [1] {ECO:0000313|EMBL:ACU69102.1, ECO:0000313|Proteomes:UP000000851}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897
RC   {ECO:0000313|Proteomes:UP000000851};
RX   PubMed=21304647;
RA   Copeland A., Lapidus A., Glavina Del Rio T., Nolan M., Lucas S.,
RA   Chen F., Tice H., Cheng J.F., Bruce D., Goodwin L., Pitluck S.,
RA   Mikhailova N., Pati A., Ivanova N., Mavromatis K., Chen A.,
RA   Palaniappan K., Chain P., Land M., Hauser L., Chang Y.J.,
RA   Jeffries C.D., Chertkov O., Brettin T., Detter J.C., Han C., Ali Z.,
RA   Tindall B.J., Goker M., Bristow J., Eisen J.A., Markowitz V.,
RA   Hugenholtz P., Kyrpides N.C., Klenk H.P.;
RT   "Complete genome sequence of Catenulispora acidiphila type strain (ID
RT   139908).";
RL   Stand. Genomic Sci. 1:119-125(2009).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS00565917}.
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DR   EMBL; CP001700; ACU69102.1; -; Genomic_DNA.
DR   RefSeq; WP_012784397.1; NC_013131.1.
DR   ProteinModelPortal; C7QHG3; -.
DR   STRING; 479433.Caci_0147; -.
DR   EnsemblBacteria; ACU69102; ACU69102; Caci_0147.
DR   KEGG; cai:Caci_0147; -.
DR   eggNOG; ENOG4108SGZ; Bacteria.
DR   eggNOG; ENOG4111INY; LUCA.
DR   HOGENOM; HOG000094755; -.
DR   OMA; FDQARRT; -.
DR   OrthoDB; POG091H04ZH; -.
DR   Proteomes; UP000000851; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014325; RNA_pol_sigma-E_actinobac.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02983; SigE-fam_strep; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; C7QHG3.
DR   SWISS-2DPAGE; C7QHG3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000851};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000851};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       14     80       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      103    154       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   170 AA;  19364 MW;  B96066DA379328CB CRC64;
     MDKSYEAEFA ELVAAKGAAL RRTAYLMCAD WHLAEDLVQT VFVKVHLHWR RIKRQETFDA
     YLRTTLFRAY LDTRRAKWRR ETPAEYLPEL EAPGTEPGDD RDVLVAALRR IPPRQRAVLV
     LRYWEDLSVE ETARLLGCAA GTVKSQAARG LAALRPLLAG TPFESVTAEH
//

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