(data stored in SCRATCH zone)

SWISSPROT: C8W305_DESAS

ID   C8W305_DESAS            Unreviewed;       219 AA.
AC   C8W305;
DT   03-NOV-2009, integrated into UniProtKB/TrEMBL.
DT   03-NOV-2009, sequence version 1.
DT   16-JAN-2019, entry version 62.
DE   RecName: Full=50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00719970};
DE   AltName: Full=General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00719974};
GN   Name=rplY {ECO:0000256|HAMAP-Rule:MF_01334};
GN   Synonyms=ctc {ECO:0000256|HAMAP-Rule:MF_01334};
GN   OrderedLocusNames=Dtox_0208 {ECO:0000313|EMBL:ACV61161.1};
OS   Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM
OS   B-1644) (Desulfofarcimen acetoxidans).
OC   Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
OC   Desulfofarcimen.
OX   NCBI_TaxID=485916 {ECO:0000313|EMBL:ACV61161.1, ECO:0000313|Proteomes:UP000002217};
RN   [1] {ECO:0000313|EMBL:ACV61161.1, ECO:0000313|Proteomes:UP000002217}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 49208 / DSM 771 / VKM B-1644
RC   {ECO:0000313|Proteomes:UP000002217};
RX   PubMed=21304664; DOI=10.4056/sigs.39508;
RA   Spring S., Lapidus A., Schroder M., Gleim D., Sims D., Meincke L.,
RA   Glavina Del Rio T., Tice H., Copeland A., Cheng J.F., Lucas S.,
RA   Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N.,
RA   Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Saunders E.,
RA   Brettin T., Detter J.C., Goker M., Bristow J., Eisen J.A.,
RA   Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Han C.;
RT   "Complete genome sequence of Desulfotomaculum acetoxidans type strain
RT   (5575).";
RL   Stand. Genomic Sci. 1:242-253(2009).
CC   -!- FUNCTION: This is one of the proteins that binds to the 5S RNA in
CC       the ribosome where it forms part of the central protuberance.
CC       {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00720025}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S
CC       rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S
CC       rRNA independently of L5 and L18. {ECO:0000256|HAMAP-
CC       Rule:MF_01334, ECO:0000256|SAAS:SAAS00719991}.
CC   -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL25
CC       family. CTC subfamily. {ECO:0000256|HAMAP-Rule:MF_01334,
CC       ECO:0000256|SAAS:SAAS00804041}.
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DR   EMBL; CP001720; ACV61161.1; -; Genomic_DNA.
DR   RefSeq; WP_015755882.1; NC_013216.1.
DR   STRING; 485916.Dtox_0208; -.
DR   EnsemblBacteria; ACV61161; ACV61161; Dtox_0208.
DR   KEGG; dae:Dtox_0208; -.
DR   eggNOG; ENOG4105KW6; Bacteria.
DR   eggNOG; COG1825; LUCA.
DR   HOGENOM; HOG000214906; -.
DR   KO; K02897; -.
DR   OMA; GDSIHIS; -.
DR   OrthoDB; 1673077at2; -.
DR   BioCyc; DACE485916:G1GFV-214-MONOMER; -.
DR   Proteomes; UP000002217; Chromosome.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0008097; F:5S rRNA binding; IEA:InterPro.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   CDD; cd00495; Ribosomal_L25_TL5_CTC; 1.
DR   Gene3D; 2.170.120.20; -; 1.
DR   Gene3D; 2.40.240.10; -; 1.
DR   HAMAP; MF_01334; Ribosomal_L25_CTC; 1.
DR   InterPro; IPR020056; Rbsml_L25/Gln-tRNA_synth_N.
DR   InterPro; IPR029751; Ribosomal_L25.
DR   InterPro; IPR011035; Ribosomal_L25/Gln-tRNA_synth.
DR   InterPro; IPR020057; Ribosomal_L25_b-dom.
DR   InterPro; IPR037121; Ribosomal_L25_C.
DR   InterPro; IPR001021; Ribosomal_L25_long.
DR   Pfam; PF01386; Ribosomal_L25p; 1.
DR   Pfam; PF14693; Ribosomal_TL5_C; 1.
DR   ProDom; PD012503; Ribosomal_L25; 1.
DR   SUPFAM; SSF50715; SSF50715; 1.
DR   TIGRFAMs; TIGR00731; bL25_bact_ctc; 1.
PE   3: Inferred from homology;
DR   PRODOM; C8W305.
DR   SWISS-2DPAGE; C8W305.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002217};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002217};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01334,
KW   ECO:0000256|SAAS:SAAS01080237};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01334,
KW   ECO:0000256|SAAS:SAAS01080247};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01334,
KW   ECO:0000256|SAAS:SAAS01080250};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01334,
KW   ECO:0000256|SAAS:SAAS01080251}.
FT   DOMAIN      112    194       Ribosomal_TL5_C. {ECO:0000259|Pfam:
FT                                PF14693}.
SQ   SEQUENCE   219 AA;  23628 MW;  8B80132FB1EB0406 CRC64;
     MAEDLQTTGA SLDAYPREGC GKGYSNKLFS KGYMPAVLYS KSIGSKPLEL EARALEDVLK
     SKTGRNSVID LHLKSGDGED SYKVMVKDLQ YHPIRRSYLH ADFLEISLTD RVQIAAKVVL
     VGEAPGVAEE GGILDQIIRE VGVKCLPGSI PDIITVDVSK LYIGDSVAVM DLQAGPDIEI
     LADEDLVVAR VIPPQSLQEE PGIETEAGEG EKTGIKTEE
//

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