(data stored in SCRATCH zone)

SWISSPROT: C8W3W8_DESAS

ID   C8W3W8_DESAS            Unreviewed;       214 AA.
AC   C8W3W8;
DT   03-NOV-2009, integrated into UniProtKB/TrEMBL.
DT   03-NOV-2009, sequence version 1.
DT   16-JAN-2019, entry version 64.
DE   SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACV61222.1};
GN   OrderedLocusNames=Dtox_0269 {ECO:0000313|EMBL:ACV61222.1};
OS   Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM
OS   B-1644) (Desulfofarcimen acetoxidans).
OC   Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
OC   Desulfofarcimen.
OX   NCBI_TaxID=485916 {ECO:0000313|EMBL:ACV61222.1, ECO:0000313|Proteomes:UP000002217};
RN   [1] {ECO:0000313|EMBL:ACV61222.1, ECO:0000313|Proteomes:UP000002217}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 49208 / DSM 771 / VKM B-1644
RC   {ECO:0000313|Proteomes:UP000002217};
RX   PubMed=21304664; DOI=10.4056/sigs.39508;
RA   Spring S., Lapidus A., Schroder M., Gleim D., Sims D., Meincke L.,
RA   Glavina Del Rio T., Tice H., Copeland A., Cheng J.F., Lucas S.,
RA   Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N.,
RA   Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Saunders E.,
RA   Brettin T., Detter J.C., Goker M., Bristow J., Eisen J.A.,
RA   Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Han C.;
RT   "Complete genome sequence of Desulfotomaculum acetoxidans type strain
RT   (5575).";
RL   Stand. Genomic Sci. 1:242-253(2009).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001720; ACV61222.1; -; Genomic_DNA.
DR   RefSeq; WP_015755943.1; NC_013216.1.
DR   STRING; 485916.Dtox_0269; -.
DR   EnsemblBacteria; ACV61222; ACV61222; Dtox_0269.
DR   KEGG; dae:Dtox_0269; -.
DR   eggNOG; ENOG4105QIV; Bacteria.
DR   eggNOG; COG1595; LUCA.
DR   HOGENOM; HOG000219029; -.
DR   KO; K03091; -.
DR   OMA; PIYDEDS; -.
DR   OrthoDB; 1857862at2; -.
DR   BioCyc; DACE485916:G1GFV-279-MONOMER; -.
DR   Proteomes; UP000002217; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014218; RNA_pol_sigma-H.
DR   InterPro; IPR016371; RNA_pol_sigma-H_factor.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR000792; Tscrpt_reg_LuxR_C.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   PIRSF; PIRSF002939; RNA_polymerase_sigma-H_factor; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   TIGRFAMs; TIGR02859; spore_sigH; 1.
DR   PROSITE; PS00622; HTH_LUXR_1; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
PE   3: Inferred from homology;
DR   PRODOM; C8W3W8.
DR   SWISS-2DPAGE; C8W3W8.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002217};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002217};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       60     73       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00715}.
FT   DOMAIN      177    204       HTH luxR-type. {ECO:0000259|PROSITE:
FT                                PS00622}.
FT   COILED      184    211       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   214 AA;  24995 MW;  1CBE1B9B117D4A4A CRC64;
     MIISAQREEI AGFEVLIDED VVEFAREGDD IALEYLINKY KNFVRAKARS YFLIGADRED
     IIQEGMIGLY KAIRDFRMDK LSSFRAFAEL CITRQIITAI KTATRQKHIP LNSYVSLNKP
     IYDDDSDRTL LDVISGTKIT DPEELIISRE EFDDIEEKMG EILSSLEWKV LMSYLEGKSY
     QEIAEDLKRH VKSIDNALQR VKRKLERYLE KREI
//

If you have problems or comments...

PBIL Back to PBIL home page