(data stored in SCRATCH zone)

SWISSPROT: C8W3Y6_DESAS

ID   C8W3Y6_DESAS            Unreviewed;       206 AA.
AC   C8W3Y6;
DT   03-NOV-2009, integrated into UniProtKB/TrEMBL.
DT   03-NOV-2009, sequence version 1.
DT   16-JAN-2019, entry version 54.
DE   RecName: Full=50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328};
GN   Name=rplD {ECO:0000256|HAMAP-Rule:MF_01328};
GN   OrderedLocusNames=Dtox_0287 {ECO:0000313|EMBL:ACV61240.1};
OS   Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM
OS   B-1644) (Desulfofarcimen acetoxidans).
OC   Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
OC   Desulfofarcimen.
OX   NCBI_TaxID=485916 {ECO:0000313|EMBL:ACV61240.1, ECO:0000313|Proteomes:UP000002217};
RN   [1] {ECO:0000313|EMBL:ACV61240.1, ECO:0000313|Proteomes:UP000002217}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 49208 / DSM 771 / VKM B-1644
RC   {ECO:0000313|Proteomes:UP000002217};
RX   PubMed=21304664; DOI=10.4056/sigs.39508;
RA   Spring S., Lapidus A., Schroder M., Gleim D., Sims D., Meincke L.,
RA   Glavina Del Rio T., Tice H., Copeland A., Cheng J.F., Lucas S.,
RA   Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N.,
RA   Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Saunders E.,
RA   Brettin T., Detter J.C., Goker M., Bristow J., Eisen J.A.,
RA   Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Han C.;
RT   "Complete genome sequence of Desulfotomaculum acetoxidans type strain
RT   (5575).";
RL   Stand. Genomic Sci. 1:242-253(2009).
CC   -!- FUNCTION: Forms part of the polypeptide exit tunnel.
CC       {ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- FUNCTION: One of the primary rRNA binding proteins, this protein
CC       initially binds near the 5'-end of the 23S rRNA. It is important
CC       during the early stages of 50S assembly. It makes multiple
CC       contacts with different domains of the 23S rRNA in the assembled
CC       50S subunit and ribosome. {ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-
CC       Rule:MF_01328}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL4 family.
CC       {ECO:0000256|HAMAP-Rule:MF_01328}.
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DR   EMBL; CP001720; ACV61240.1; -; Genomic_DNA.
DR   RefSeq; WP_015755961.1; NC_013216.1.
DR   STRING; 485916.Dtox_0287; -.
DR   EnsemblBacteria; ACV61240; ACV61240; Dtox_0287.
DR   KEGG; dae:Dtox_0287; -.
DR   eggNOG; ENOG4106U5A; Bacteria.
DR   eggNOG; COG0088; LUCA.
DR   HOGENOM; HOG000248767; -.
DR   KO; K02926; -.
DR   OMA; GAGRKPF; -.
DR   OrthoDB; 1572673at2; -.
DR   BioCyc; DACE485916:G1GFV-302-MONOMER; -.
DR   Proteomes; UP000002217; Chromosome.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.1370.10; -; 1.
DR   HAMAP; MF_01328_B; Ribosomal_L4_B; 1.
DR   InterPro; IPR002136; Ribosomal_L4/L1e.
DR   InterPro; IPR023574; Ribosomal_L4_dom_sf.
DR   InterPro; IPR013005; Ribosomal_uL4/L1e.
DR   PANTHER; PTHR10746; PTHR10746; 1.
DR   Pfam; PF00573; Ribosomal_L4; 1.
DR   SUPFAM; SSF52166; SSF52166; 1.
DR   TIGRFAMs; TIGR03953; rplD_bact; 1.
PE   3: Inferred from homology;
DR   PRODOM; C8W3Y6.
DR   SWISS-2DPAGE; C8W3Y6.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002217};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002217};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01328};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01328,
KW   ECO:0000313|EMBL:ACV61240.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01328};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01328}.
SQ   SEQUENCE   206 AA;  22460 MW;  7D940950659D6C43 CRC64;
     MPTVALFNIK GEQVGEVALK DEVFGIEVNE SVLHDAVVMQ LAGRRQGTHD TKTRGEVRGG
     GKKPWRQKGT GRARHGTIRS PIWRGGGIVF GPHPRTYKYK LPKKVRRLAL KSALSSKVLA
     GNIKVLDALS MEMPKTKEMV GILKNLQVDK ALLVIADKDM NVIKSARNIP GIKPVGAAGV
     NVYDLLKHTT LVITKDAVSK VEEVLS
//

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