(data stored in SCRATCH zone)

SWISSPROT: C8W400_DESAS

ID   C8W400_DESAS            Unreviewed;       180 AA.
AC   C8W400;
DT   03-NOV-2009, integrated into UniProtKB/TrEMBL.
DT   03-NOV-2009, sequence version 1.
DT   16-JAN-2019, entry version 53.
DE   RecName: Full=50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870};
GN   Name=rplF {ECO:0000256|HAMAP-Rule:MF_01365};
GN   OrderedLocusNames=Dtox_0301 {ECO:0000313|EMBL:ACV61254.1};
OS   Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM
OS   B-1644) (Desulfofarcimen acetoxidans).
OC   Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
OC   Desulfofarcimen.
OX   NCBI_TaxID=485916 {ECO:0000313|EMBL:ACV61254.1, ECO:0000313|Proteomes:UP000002217};
RN   [1] {ECO:0000313|EMBL:ACV61254.1, ECO:0000313|Proteomes:UP000002217}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 49208 / DSM 771 / VKM B-1644
RC   {ECO:0000313|Proteomes:UP000002217};
RX   PubMed=21304664; DOI=10.4056/sigs.39508;
RA   Spring S., Lapidus A., Schroder M., Gleim D., Sims D., Meincke L.,
RA   Glavina Del Rio T., Tice H., Copeland A., Cheng J.F., Lucas S.,
RA   Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N.,
RA   Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Saunders E.,
RA   Brettin T., Detter J.C., Goker M., Bristow J., Eisen J.A.,
RA   Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Han C.;
RT   "Complete genome sequence of Desulfotomaculum acetoxidans type strain
RT   (5575).";
RL   Stand. Genomic Sci. 1:242-253(2009).
CC   -!- FUNCTION: This protein binds to the 23S rRNA, and is important in
CC       its secondary structure. It is located near the subunit interface
CC       in the base of the L7/L12 stalk, and near the tRNA binding site of
CC       the peptidyltransferase center. {ECO:0000256|HAMAP-Rule:MF_01365,
CC       ECO:0000256|RuleBase:RU003870}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-
CC       Rule:MF_01365}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC       {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003869}.
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DR   EMBL; CP001720; ACV61254.1; -; Genomic_DNA.
DR   RefSeq; WP_015755975.1; NC_013216.1.
DR   STRING; 485916.Dtox_0301; -.
DR   EnsemblBacteria; ACV61254; ACV61254; Dtox_0301.
DR   KEGG; dae:Dtox_0301; -.
DR   eggNOG; ENOG4108R5J; Bacteria.
DR   eggNOG; COG0097; LUCA.
DR   HOGENOM; HOG000039903; -.
DR   KO; K02933; -.
DR   OMA; INNMVVG; -.
DR   OrthoDB; 1398618at2; -.
DR   BioCyc; DACE485916:G1GFV-316-MONOMER; -.
DR   Proteomes; UP000002217; Chromosome.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.90.930.12; -; 2.
DR   HAMAP; MF_01365_B; Ribosomal_L6_B; 1.
DR   InterPro; IPR000702; Ribosomal_L6.
DR   InterPro; IPR020040; Ribosomal_L6_a/b-dom.
DR   InterPro; IPR036789; Ribosomal_L6_a/b-dom_sf.
DR   InterPro; IPR019906; Ribosomal_L6_bac-type.
DR   InterPro; IPR002358; Ribosomal_L6_CS.
DR   PANTHER; PTHR11655; PTHR11655; 1.
DR   PANTHER; PTHR11655:SF14; PTHR11655:SF14; 1.
DR   Pfam; PF00347; Ribosomal_L6; 2.
DR   PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR   PRINTS; PR00059; RIBOSOMALL6.
DR   SUPFAM; SSF56053; SSF56053; 2.
DR   TIGRFAMs; TIGR03654; L6_bact; 1.
DR   PROSITE; PS00525; RIBOSOMAL_L6_1; 1.
PE   3: Inferred from homology;
DR   PRODOM; C8W400.
DR   SWISS-2DPAGE; C8W400.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002217};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002217};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01365,
KW   ECO:0000256|RuleBase:RU003869};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01365,
KW   ECO:0000256|RuleBase:RU003869, ECO:0000313|EMBL:ACV61254.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01365,
KW   ECO:0000256|RuleBase:RU003870};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01365,
KW   ECO:0000256|RuleBase:RU003870}.
FT   DOMAIN       11     82       Ribosomal_L6. {ECO:0000259|Pfam:PF00347}.
FT   DOMAIN       90    164       Ribosomal_L6. {ECO:0000259|Pfam:PF00347}.
SQ   SEQUENCE   180 AA;  19918 MW;  C5D00E9A8576A981 CRC64;
     MSRIGKLPIA VPQGVDISIE GNKVKVKGPK GELERQLHKD MILKKEDNVV TVERPSEDKK
     HKSLHGLTRT LLFNMVTGVT QGYQKTLELV GVGYRASLQG KKLVLAVGYS HPVEFEPADD
     LQIEVPANNR VIVKGIDKEK VGQLAAKIRA VREPEPYKGK GIKYEGEYVR RKAGKAGKAR
//

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