(data stored in ACNUC7421 zone)

SWISSPROT: YCDA_BACSU

ID   YCDA_BACSU              Reviewed;         354 AA.
AC   O34538;
DT   10-JAN-2003, integrated into UniProtKB/Swiss-Prot.
DT   01-JAN-1998, sequence version 1.
DT   11-DEC-2019, entry version 99.
DE   RecName: Full=Uncharacterized lipoprotein YcdA;
DE   Flags: Precursor;
GN   Name=ycdA; OrderedLocusNames=BSU02780;
OS   Bacillus subtilis (strain 168).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=224308;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=168;
RX   PubMed=9274031; DOI=10.1099/00221287-143-8-2775;
RA   Kumano M., Tamakoshi A., Yamane K.;
RT   "A 32 kb nucleotide sequence from the region of the lincomycin-resistance
RT   gene (22 degrees-25 degrees) of the Bacillus subtilis chromosome and
RT   identification of the site of the lin-2 mutation.";
RL   Microbiology 143:2775-2782(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=168;
RX   PubMed=9384377; DOI=10.1038/36786;
RA   Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA   Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA   Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA   Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA   Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA   Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA   Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA   Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA   Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA   Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA   Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA   Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA   Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA   Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA   Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA   Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA   Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA   Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA   Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA   Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA   Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA   Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA   Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA   Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA   Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA   Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA   Yoshikawa H., Danchin A.;
RT   "The complete genome sequence of the Gram-positive bacterium Bacillus
RT   subtilis.";
RL   Nature 390:249-256(1997).
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|PROSITE-
CC       ProRule:PRU00303}; Lipid-anchor {ECO:0000255|PROSITE-ProRule:PRU00303}.
DR   EMBL; AB000617; BAA22239.1; -; Genomic_DNA.
DR   EMBL; AL009126; CAB12072.1; -; Genomic_DNA.
DR   PIR; C69755; C69755.
DR   RefSeq; NP_388160.1; NC_000964.3.
DR   RefSeq; WP_003234750.1; NZ_JNCM01000030.1.
DR   PDB; 4R4G; X-ray; 2.62 A; A=30-354.
DR   PDBsum; 4R4G; -.
DR   SMR; O34538; -.
DR   STRING; 224308.BSU02780; -.
DR   PaxDb; O34538; -.
DR   PRIDE; O34538; -.
DR   EnsemblBacteria; CAB12072; CAB12072; BSU02780.
DR   GeneID; 938380; -.
DR   KEGG; bsu:BSU02780; -.
DR   PATRIC; fig|224308.179.peg.288; -.
DR   HOGENOM; HOG000008728; -.
DR   OMA; DDAYGAN; -.
DR   BioCyc; BSUB:BSU02780-MONOMER; -.
DR   Proteomes; UP000001570; Chromosome.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   Gene3D; 2.60.40.1240; -; 1.
DR   InterPro; IPR029051; DUF4352.
DR   InterPro; IPR031343; DUF5105.
DR   InterPro; IPR029050; Immunoprotect_excell_Ig-like.
DR   Pfam; PF11611; DUF4352; 1.
DR   Pfam; PF17118; DUF5105; 1.
DR   PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE   1: Evidence at protein level;
DR   PRODOM; O34538.
DR   SWISS-2DPAGE; O34538.
KW   3D-structure; Cell membrane; Lipoprotein; Membrane; Palmitate;
KW   Reference proteome; Signal.
FT   SIGNAL          1..21
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00303"
FT   CHAIN           22..354
FT                   /note="Uncharacterized lipoprotein YcdA"
FT                   /id="PRO_0000013691"
FT   LIPID           22
FT                   /note="N-palmitoyl cysteine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00303"
FT   LIPID           22
FT                   /note="S-diacylglycerol cysteine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00303"
FT   STRAND          35..39
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          44..53
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          67..76
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          79..81
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          83..85
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           87..89
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          90..94
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          97..99
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           107..109
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          114..116
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          121..130
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          135..140
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           148..151
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          153..158
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           162..169
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           170..172
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           173..185
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           193..198
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           202..220
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           225..229
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           231..247
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          249..258
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          261..269
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           276..288
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           296..311
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   STRAND          321..329
FT                   /evidence="ECO:0000244|PDB:4R4G"
FT   HELIX           342..349
FT                   /evidence="ECO:0000244|PDB:4R4G"
SQ   SEQUENCE   354 AA;  39180 MW;  90A2B4F2C6F7531A CRC64;
     MFQKKTYAVF LILLLMMFTA ACSGSKTSAE KKESETEKSS DIAQVKIKDV SYTLPSKYDK
     STSDDQLVLK VNVAVKNTGK DPLNVDSMDF TLYQGDTKMS DTDPEDYSEK LQGSTINADK
     SVEGNLFFVV DKGKQYELNY TPESYGDKKP KSVTFKIDGK DKKILATADK LQDSAKALSA
     YVDVLLFGKD NADFEKITGA NKNEIVNDFN ESAKDGYLSA SGLSSTYADS KALDNIVNGI
     KEGLSKNSSI QAKTTSISKD EAIVEATVKP VDASSLSDRI EDKVKDYYSK NSSASYEEAV
     KYALQVYPEE FKKLGPASSE KTVEVKMKKN DIDQWQLDMD DYRAAELVEA FIKE
//

If you have problems or comments...

PBIL Back to PBIL home page