(data stored in SCRATCH zone)

SWISSPROT: QKIL1_ARATH

ID   QKIL1_ARATH             Reviewed;         308 AA.
AC   Q0WLR1; O65586; Q8RWT6;
DT   16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT   31-OCT-2006, sequence version 1.
DT   11-DEC-2019, entry version 78.
DE   RecName: Full=KH domain-containing protein At4g26480;
DE   AltName: Full=Quaking-like protein 1;
GN   OrderedLocusNames=At4g26480; ORFNames=M3E9.90;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY.
RX   PubMed=11809873; DOI=10.1093/nar/30.3.623;
RA   Lorkovic Z.J., Barta A.;
RT   "Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain
RT   RNA-binding proteins from the flowering plant Arabidopsis thaliana.";
RL   Nucleic Acids Res. 30:623-635(2002).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=CAA18222.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g26480 has been split into 2 genes: At4g26480 and At4g26485.; Evidence={ECO:0000305};
CC       Sequence=CAB79503.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g26480 has been split into 2 genes: At4g26480 and At4g26485.; Evidence={ECO:0000305};
DR   EMBL; AL022223; CAA18222.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AL161565; CAB79503.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002687; AEE85206.1; -; Genomic_DNA.
DR   EMBL; CP002687; ANM67878.1; -; Genomic_DNA.
DR   EMBL; AY091120; AAM14070.1; -; mRNA.
DR   EMBL; AK230131; BAF01946.1; -; mRNA.
DR   PIR; T05056; T05056.
DR   RefSeq; NP_001320071.1; NM_001341802.1.
DR   RefSeq; NP_194378.2; NM_118781.3.
DR   SMR; Q0WLR1; -.
DR   STRING; 3702.AT4G26480.1; -.
DR   iPTMnet; Q0WLR1; -.
DR   PaxDb; Q0WLR1; -.
DR   PRIDE; Q0WLR1; -.
DR   EnsemblPlants; AT4G26480.1; AT4G26480.1; AT4G26480.
DR   EnsemblPlants; AT4G26480.3; AT4G26480.3; AT4G26480.
DR   GeneID; 828754; -.
DR   Gramene; AT4G26480.1; AT4G26480.1; AT4G26480.
DR   Gramene; AT4G26480.3; AT4G26480.3; AT4G26480.
DR   KEGG; ath:AT4G26480; -.
DR   Araport; AT4G26480; -.
DR   TAIR; locus:2131468; AT4G26480.
DR   eggNOG; KOG1588; Eukaryota.
DR   eggNOG; COG5176; LUCA.
DR   HOGENOM; HOG000238548; -.
DR   InParanoid; Q0WLR1; -.
DR   KO; K14945; -.
DR   OMA; EATTECR; -.
DR   OrthoDB; 1565749at2759; -.
DR   PRO; PR:Q0WLR1; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; Q0WLR1; baseline and differential.
DR   Genevisible; Q0WLR1; AT.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   InterPro; IPR004087; KH_dom.
DR   InterPro; IPR036612; KH_dom_type_1_sf.
DR   InterPro; IPR032377; STAR_dimer.
DR   Pfam; PF16544; STAR_dimer; 1.
DR   SMART; SM00322; KH; 1.
DR   SUPFAM; SSF54791; SSF54791; 1.
PE   2: Evidence at transcript level;
DR   PRODOM; Q0WLR1.
DR   SWISS-2DPAGE; Q0WLR1.
KW   Nucleus; Phosphoprotein; Reference proteome; RNA-binding.
FT   CHAIN           1..308
FT                   /note="KH domain-containing protein At4g26480"
FT                   /id="PRO_0000357028"
FT   DOMAIN          165..232
FT                   /note="KH"
FT   COMPBIAS        8..23
FT                   /note="Gly-rich"
FT   MOD_RES         294
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9ZVI3"
FT   CONFLICT        308
FT                   /note="G -> S (in Ref. 3; AAM14070)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   308 AA;  33588 MW;  9DE38905F6D503E0 CRC64;
     MMMMTSLGGG AGGGGGGGGS GGGRFVTYPP PLSVPPSAPQ SPNFSGGLRS QPSFLVEQEK
     YLSELLAERH KLTPFLPVLP HVCRLMNQEI LRVTTLLENA LSQSRFDHPS PLASGGIFQN
     SRADMNGWAS QFPSERSVSS SPAPNWLNSP GSSSGLIVKR TIRVDIPVDK YPNYNFVGRL
     LGPRGNSLKR VEASTDCRVL IRGRGSIKDP IKEDMMRGKP GYEHLNEPLH ILVEAELPIE
     IVDARLMQAR EILDDLLTPV EETHDFYKKQ QLRELALLNG SLREEGSPMS GSISPYNSLG
     MKRAKTRG
//

If you have problems or comments...

PBIL Back to PBIL home page