(data stored in SCRATCH zone)

SWISSPROT: Q9SUA1_ARATH

ID   Q9SUA1_ARATH            Unreviewed;       763 AA.
AC   Q9SUA1;
DT   01-MAY-2000, integrated into UniProtKB/TrEMBL.
DT   01-MAY-2000, sequence version 1.
DT   11-DEC-2019, entry version 135.
DE   SubName: Full=DEK domain-containing chromatin associated protein {ECO:0000313|EMBL:AEE85228.1};
GN   Name=DEK3 {ECO:0000313|EMBL:AEE85228.1};
GN   OrderedLocusNames=At4g26630 {ECO:0000313|Araport:AT4G26630,
GN   ECO:0000313|EMBL:CAB43859.1};
GN   ORFNames=T15N24.80 {ECO:0000313|EMBL:AEE85228.1}, T15N24_80
GN   {ECO:0000313|EMBL:AEE85228.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702 {ECO:0000313|EMBL:CAB43859.1};
RN   [1] {ECO:0000313|EMBL:AEE85228.1, ECO:0000313|Proteomes:UP000006548}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=10617198; DOI=10.1038/47134;
RG   EU;
RG   CSHL and WU Arabidopsis Sequencing Project;
RA   Mayer K., Schuller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Dusterhoft A., Stiekema W., Entian K.D., Terryn N., Harris B., Ansorge W.,
RA   Brandt P., Grivell L., Rieger M., Weichselgartner M., de Simone V.,
RA   Obermaier B., Mache R., Muller M., Kreis M., Delseny M., Puigdomenech P.,
RA   Watson M., Schmidtheini T., Reichert B., Portatelle D., Perez-Alonso M.,
RA   Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H.,
RA   Ridley P., Langham S.A., McCullagh B., Bilham L., Robben J.,
RA   Van der Schueren J., Grymonprez B., Chuang Y.J., Vandenbussche F.,
RA   Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
RA   Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E.,
RA   Brandt A., Peters S., van Staveren M., Dirske W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Kotter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., Van Montagu M., Rogers J.,
RA   Cronin A., Quail M., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M.,
RA   Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M.,
RA   Benes V., Rechmann S., Borkova D., Blocker H., Scharfe M., Grimm M.,
RA   Lohnert T.H., Dose S., de Haan M., Maarse A., Schafer M., Muller-Auer S.,
RA   Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
RA   Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O.,
RA   Quigley F., Clabauld G., Mundlein A., Felber R., Schnabl S., Hiller R.,
RA   Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C.,
RA   Montfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sehkon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L., Nelson J.,
RA   Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J.,
RA   Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffmann J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [2] {ECO:0000313|EMBL:CAB43859.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Bevan M., Zimmermann W., Grueneisen A., Wambutt R., Kalicki J.,
RA   Wohldmann P., Smith A., Bancroft I., Mewes H.W., Lemcke K., Mayer K.F.X.;
RL   Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:CAB79518.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Zimmermann W., Grueneisen A., Wambutt R., Kalicki J., Wohldmann P.,
RA   Smith A., Mewes H.W., Lemcke K., Mayer K.F.X.;
RL   Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:CAB43859.1}
RP   NUCLEOTIDE SEQUENCE.
RA   EU Arabidopsis sequencing project;
RL   Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000213|PubMed:19245862}
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19245862; DOI=10.1016/j.jprot.2009.02.004;
RA   Jones A.M., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E.,
RA   Rathjen J.P., Peck S.C.;
RT   "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis
RT   thaliana.";
RL   J. Proteomics 72:439-451(2009).
RN   [6] {ECO:0000213|PubMed:19376835}
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19376835; DOI=10.1104/pp.109.138677;
RA   Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA   Grossmann J., Gruissem W., Baginsky S.;
RT   "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT   chloroplast kinase substrates and phosphorylation networks.";
RL   Plant Physiol. 150:889-903(2009).
RN   [7] {ECO:0000313|EMBL:AEE85228.1}
RP   NUCLEOTIDE SEQUENCE.
RG   TAIR10;
RA   Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [8] {ECO:0000313|EMBL:AEE85228.1}
RP   GENOME REANNOTATION.
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [9] {ECO:0000313|Proteomes:UP000006548}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
CC   -!- INTERACTION:
CC       O82265:SCC3; NbExp=2; IntAct=EBI-1787282, EBI-9397077;
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DR   EMBL; CP002687; AEE85228.1; -; Genomic_DNA.
DR   EMBL; CP002687; AEE85229.1; -; Genomic_DNA.
DR   EMBL; AL078465; CAB43859.1; -; Genomic_DNA.
DR   EMBL; AL161565; CAB79518.1; -; Genomic_DNA.
DR   PIR; T08929; T08929.
DR   RefSeq; NP_001031724.1; NM_001036647.3.
DR   RefSeq; NP_194393.3; NM_118797.5.
DR   IntAct; Q9SUA1; 19.
DR   STRING; 3702.AT4G26630.2; -.
DR   EnsemblPlants; AT4G26630.1; AT4G26630.1; AT4G26630.
DR   EnsemblPlants; AT4G26630.2; AT4G26630.2; AT4G26630.
DR   GeneID; 828770; -.
DR   Gramene; AT4G26630.1; AT4G26630.1; AT4G26630.
DR   Gramene; AT4G26630.2; AT4G26630.2; AT4G26630.
DR   KEGG; ath:AT4G26630; -.
DR   Araport; AT4G26630; -.
DR   TAIR; locus:2133847; AT4G26630.
DR   eggNOG; KOG2266; Eukaryota.
DR   eggNOG; ENOG410XTJA; LUCA.
DR   HOGENOM; HOG000240218; -.
DR   OMA; RFSGYTW; -.
DR   OrthoDB; 912022at2759; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   GO; GO:0005829; C:cytosol; IDA:TAIR.
DR   GO; GO:0005634; C:nucleus; IDA:TAIR.
DR   GO; GO:0003682; F:chromatin binding; IDA:TAIR.
DR   GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR   GO; GO:0006338; P:chromatin remodeling; IDA:TAIR.
DR   GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEP:TAIR.
DR   GO; GO:2000779; P:regulation of double-strand break repair; IBA:GO_Central.
DR   GO; GO:0009651; P:response to salt stress; IMP:TAIR.
DR   InterPro; IPR014876; DEK_C.
DR   Pfam; PF08766; DEK_C; 1.
PE   1: Evidence at protein level;
DR   PRODOM; Q9SUA1.
DR   SWISS-2DPAGE; Q9SUA1.
KW   Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT   DOMAIN          677..730
FT                   /note="DEK_C"
FT                   /evidence="ECO:0000259|Pfam:PF08766"
FT   REGION          1..324
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          458..681
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          730..763
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        35..240
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        251..266
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        275..324
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        499..521
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        522..536
FT                   /note="Acidic"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        537..563
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        576..602
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        625..650
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        662..681
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        732..746
FT                   /note="Acidic"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        747..763
FT                   /note="Polyampholyte"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   763 AA;  85249 MW;  D67F4F5BD4DB480B CRC64;
     MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK
     DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE ATNMDEDADG KKEQTDDGVS
     VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD
     IKEEGTLVDE DKGTDMDEKV ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV
     EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
     KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK
     VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW HGDEKKAKEK VKEKLEKCTK
     EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK
     RTPKKTSPTA GSSSSKRSAK SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE
     KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
     ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS
     ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF TDILKELAKE FTEDLTPRKS
     SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
//

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