(data stored in SCRATCH zone)

SWISSPROT: PP338_ARATH

ID   PP338_ARATH             Reviewed;         521 AA.
AC   Q9SZ10;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   11-DEC-2019, entry version 101.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At4g26680, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At4g26680; ORFNames=F10M23.20;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617198; DOI=10.1038/47134;
RA   Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA   Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA   Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA   de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA   Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA   Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA   Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA   Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA   Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA   Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA   Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA   Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA   Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA   Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA   Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA   Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA   Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA   Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA   Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA   Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA   Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA   Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA   Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA   Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA   Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA   de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA   Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA   Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA   Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA   Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA   Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA   Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA   Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA   Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA   Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA   O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA   Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA   Martienssen R., McCombie W.R.;
RT   "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL   Nature 402:769-777(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
DR   EMBL; AL035440; CAB36514.1; -; Genomic_DNA.
DR   EMBL; AL161565; CAB79523.1; -; Genomic_DNA.
DR   EMBL; CP002687; AEE85236.1; -; Genomic_DNA.
DR   EMBL; CP002687; AEE85237.1; -; Genomic_DNA.
DR   PIR; T04791; T04791.
DR   RefSeq; NP_001190849.1; NM_001203920.1.
DR   RefSeq; NP_194398.1; NM_118802.2.
DR   SMR; Q9SZ10; -.
DR   PaxDb; Q9SZ10; -.
DR   PRIDE; Q9SZ10; -.
DR   EnsemblPlants; AT4G26680.1; AT4G26680.1; AT4G26680.
DR   EnsemblPlants; AT4G26680.2; AT4G26680.2; AT4G26680.
DR   GeneID; 828775; -.
DR   Gramene; AT4G26680.1; AT4G26680.1; AT4G26680.
DR   Gramene; AT4G26680.2; AT4G26680.2; AT4G26680.
DR   KEGG; ath:AT4G26680; -.
DR   Araport; AT4G26680; -.
DR   TAIR; locus:2116372; AT4G26680.
DR   eggNOG; KOG4197; Eukaryota.
DR   eggNOG; ENOG410Z7Z7; LUCA.
DR   HOGENOM; HOG000243392; -.
DR   InParanoid; Q9SZ10; -.
DR   OMA; HLKKFRN; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9SZ10; -.
DR   PRO; PR:Q9SZ10; -.
DR   Proteomes; UP000006548; Chromosome 4.
DR   ExpressionAtlas; Q9SZ10; baseline and differential.
DR   Genevisible; Q9SZ10; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 3.
DR   TIGRFAMs; TIGR00756; PPR; 8.
DR   PROSITE; PS51375; PPR; 11.
PE   3: Inferred from homology;
DR   PRODOM; Q9SZ10.
DR   SWISS-2DPAGE; Q9SZ10.
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..38
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           39..521
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At4g26680, mitochondrial"
FT                   /id="PRO_0000363455"
FT   REPEAT          167..201
FT                   /note="PPR 1"
FT   REPEAT          202..236
FT                   /note="PPR 2"
FT   REPEAT          237..271
FT                   /note="PPR 3"
FT   REPEAT          272..306
FT                   /note="PPR 4"
FT   REPEAT          307..341
FT                   /note="PPR 5"
FT   REPEAT          342..376
FT                   /note="PPR 6"
FT   REPEAT          377..411
FT                   /note="PPR 7"
FT   REPEAT          412..446
FT                   /note="PPR 8"
FT   REPEAT          447..481
FT                   /note="PPR 9"
FT   REPEAT          482..516
FT                   /note="PPR 10"
SQ   SEQUENCE   521 AA;  59364 MW;  A9709863DF5C2AF1 CRC64;
     MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA
     HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE FFNWAKTRNP GSHSLETHAI
     VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH
     LKKFRNATDT FMQMKDYGFL PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT
     LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
     KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE
     MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF VKELDKENLV PNSSTFSALI
     MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP
     LDSRTVHQVC NGLKHQGKDQ LVKKLLQEME GKKFLQESFN N
//

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