(data stored in ACNUC9435 zone)

SWISSPROT: RF3_LISIN

ID   RF3_LISIN               Reviewed;         522 AA.
AC   Q92D33;
DT   19-OCT-2002, integrated into UniProtKB/Swiss-Prot.
DT   01-DEC-2001, sequence version 1.
DT   11-DEC-2019, entry version 105.
DE   RecName: Full=Peptide chain release factor 3 {ECO:0000255|HAMAP-Rule:MF_00072};
DE            Short=RF-3 {ECO:0000255|HAMAP-Rule:MF_00072};
GN   Name=prfC {ECO:0000255|HAMAP-Rule:MF_00072}; OrderedLocusNames=lin0987;
OS   Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
OX   NCBI_TaxID=272626;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-680 / CLIP 11262;
RX   PubMed=11679669; DOI=10.1126/science.1063447;
RA   Glaser P., Frangeul L., Buchrieser C., Rusniok C., Amend A., Baquero F.,
RA   Berche P., Bloecker H., Brandt P., Chakraborty T., Charbit A.,
RA   Chetouani F., Couve E., de Daruvar A., Dehoux P., Domann E.,
RA   Dominguez-Bernal G., Duchaud E., Durant L., Dussurget O., Entian K.-D.,
RA   Fsihi H., Garcia-del Portillo F., Garrido P., Gautier L., Goebel W.,
RA   Gomez-Lopez N., Hain T., Hauf J., Jackson D., Jones L.-M., Kaerst U.,
RA   Kreft J., Kuhn M., Kunst F., Kurapkat G., Madueno E., Maitournam A.,
RA   Mata Vicente J., Ng E., Nedjari H., Nordsiek G., Novella S., de Pablos B.,
RA   Perez-Diaz J.-C., Purcell R., Remmel B., Rose M., Schlueter T., Simoes N.,
RA   Tierrez A., Vazquez-Boland J.-A., Voss H., Wehland J., Cossart P.;
RT   "Comparative genomics of Listeria species.";
RL   Science 294:849-852(2001).
CC   -!- FUNCTION: Increases the formation of ribosomal termination complexes
CC       and stimulates activities of RF-1 and RF-2. It binds guanine
CC       nucleotides and has strong preference for UGA stop codons. It may
CC       interact directly with the ribosome. The stimulation of RF-1 and RF-2
CC       is significantly reduced by GTP and GDP, but not by GMP.
CC       {ECO:0000255|HAMAP-Rule:MF_00072}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00072}.
CC   -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC       superfamily. Classic translation factor GTPase family. PrfC subfamily.
CC       {ECO:0000255|HAMAP-Rule:MF_00072}.
DR   EMBL; AL596167; CAC96218.1; -; Genomic_DNA.
DR   PIR; AB1556; AB1556.
DR   RefSeq; WP_010990708.1; NC_003212.1.
DR   SMR; Q92D33; -.
DR   STRING; 272626.lin0987; -.
DR   PRIDE; Q92D33; -.
DR   EnsemblBacteria; CAC96218; CAC96218; CAC96218.
DR   KEGG; lin:lin0987; -.
DR   eggNOG; ENOG4105C8A; Bacteria.
DR   eggNOG; COG4108; LUCA.
DR   HOGENOM; HOG000236725; -.
DR   KO; K02837; -.
DR   OMA; VFKIHAN; -.
DR   OrthoDB; 164090at2; -.
DR   BioCyc; GCF_000195795:LIN_RS05045-MONOMER; -.
DR   Proteomes; UP000002513; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR   GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-UniRule.
DR   GO; GO:0006449; P:regulation of translational termination; IEA:UniProtKB-UniRule.
DR   CDD; cd04169; RF3; 1.
DR   Gene3D; 3.30.70.3280; -; 1.
DR   HAMAP; MF_00072; Rel_fac_3; 1.
DR   InterPro; IPR035647; EFG_III/V.
DR   InterPro; IPR004161; EFTu-like_2.
DR   InterPro; IPR031157; G_TR_CS.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR004548; PrfC.
DR   InterPro; IPR032090; RF3_C.
DR   InterPro; IPR038467; RF3_C_sf.
DR   InterPro; IPR041732; RF3_GTP-bd.
DR   InterPro; IPR005225; Small_GTP-bd_dom.
DR   InterPro; IPR000795; TF_GTP-bd_dom.
DR   InterPro; IPR009000; Transl_B-barrel_sf.
DR   PANTHER; PTHR43556; PTHR43556; 1.
DR   Pfam; PF00009; GTP_EFTU; 1.
DR   Pfam; PF03144; GTP_EFTU_D2; 1.
DR   Pfam; PF16658; RF3_C; 1.
DR   PRINTS; PR00315; ELONGATNFCT.
DR   SUPFAM; SSF50447; SSF50447; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF54980; SSF54980; 1.
DR   TIGRFAMs; TIGR00503; prfC; 1.
DR   TIGRFAMs; TIGR00231; small_GTP; 1.
DR   PROSITE; PS00301; G_TR_1; 1.
DR   PROSITE; PS51722; G_TR_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q92D33.
DR   SWISS-2DPAGE; Q92D33.
KW   Cytoplasm; GTP-binding; Nucleotide-binding; Protein biosynthesis.
FT   CHAIN           1..522
FT                   /note="Peptide chain release factor 3"
FT                   /id="PRO_0000210947"
FT   DOMAIN          10..277
FT                   /note="tr-type G"
FT   NP_BIND         19..26
FT                   /note="GTP"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00072"
FT   NP_BIND         87..91
FT                   /note="GTP"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00072"
FT   NP_BIND         141..144
FT                   /note="GTP"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00072"
SQ   SEQUENCE   522 AA;  59462 MW;  CB05AA0B76C7A8E2 CRC64;
     MSQDLQKEVA SRKTFAIISH PDAGKTTITE QLLLFGGVIR SAGTVKGKKS GKFATSDWME
     IEKQRGISVT SSVMQFDYNG SRINILDTPG HSDFSEDTYR TLMAVDSAVM VIDAAKGIEA
     QTLKLFKVCR MRGIPIFTFI NKMDRQGKMP LELLAELEEV LGIESYPMNW PIGMGKELAG
     IYDRYHRVIE QYRSEEDERF LPLGEDGDLK EVHAIQKSLY YDQALEEIML LDEAGNDFSR
     ERIIAGEQTP VFFGSALTNF GVETFLRTFV DFAPSPSSHE SNEGVIEADN PKFSGFIFKI
     QANMNPAHRD RIAFIRICSG EFERGMNVTL TRTGKSMKLA NSTQFMADDR ETVNRAVAGD
     IIGLYDTGNY QIGDTITNGS KKLEFEKLPQ FTPELFMRVY AKNVMKQKHF HKGVEQLVQE
     GAIQLFKTWR TEEYIIGAVG QLQFEVFEHR MRGEYNSEIR MEPIGKKIAR WVKEEDADEK
     LSTARSMLVK DRFDQPLFLF ENEFAINWFN DKNPDIELTS LL
//

If you have problems or comments...

PBIL Back to PBIL home page