(data stored in ACNUC7421 zone)

SWISSPROT: RPOB_PSEHT

ID   RPOB_PSEHT              Reviewed;        1341 AA.
AC   Q3ILP9;
DT   21-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT   08-NOV-2005, sequence version 1.
DT   07-JUN-2017, entry version 80.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE            Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE            EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE   AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE   AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN   Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321};
GN   OrderedLocusNames=PSHAa0222;
OS   Pseudoalteromonas haloplanktis (strain TAC 125).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=326442;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=TAC 125;
RX   PubMed=16169927; DOI=10.1101/gr.4126905;
RA   Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.N.,
RA   Cheung F., Cruveiller S., D'Amico S., Duilio A., Fang G., Feller G.,
RA   Ho C., Mangenot S., Marino G., Nilsson J., Parrilli E., Rocha E.P.C.,
RA   Rouy Z., Sekowska A., Tutino M.L., Vallenet D., von Heijne G.,
RA   Danchin A.;
RT   "Coping with cold: the genome of the versatile marine Antarctica
RT   bacterium Pseudoalteromonas haloplanktis TAC125.";
RL   Genome Res. 15:1325-1335(2005).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
CC       of DNA into RNA using the four ribonucleoside triphosphates as
CC       substrates. {ECO:0000255|HAMAP-Rule:MF_01321}.
CC   -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
CC       + RNA(n+1). {ECO:0000255|HAMAP-Rule:MF_01321}.
CC   -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1
CC       beta' and 1 omega subunit. When a sigma factor is associated with
CC       the core the holoenzyme is formed, which can initiate
CC       transcription. {ECO:0000255|HAMAP-Rule:MF_01321}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC       {ECO:0000255|HAMAP-Rule:MF_01321}.
DR   EMBL; CR954246; CAI85325.1; -; Genomic_DNA.
DR   RefSeq; WP_011326940.1; NC_007481.1.
DR   SMR; Q3ILP9; -.
DR   STRING; 326442.PSHAa0222; -.
DR   PRIDE; Q3ILP9; -.
DR   EnsemblBacteria; CAI85325; CAI85325; PSHAa0222.
DR   KEGG; pha:PSHAa0222; -.
DR   PATRIC; fig|326442.8.peg.213; -.
DR   eggNOG; ENOG4108IIJ; Bacteria.
DR   eggNOG; COG0085; LUCA.
DR   HOGENOM; HOG000218612; -.
DR   KO; K03043; -.
DR   OMA; FMTWEGY; -.
DR   OrthoDB; POG091H01MI; -.
DR   Proteomes; UP000006843; Chromosome I.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd00653; RNA_pol_B_RPB2; 1.
DR   Gene3D; 2.40.270.10; -; 1.
DR   Gene3D; 2.40.50.150; -; 1.
DR   Gene3D; 3.90.1110.10; -; 1.
DR   HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR   InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR   InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR   InterPro; IPR007120; DNA-dir_RNA_pol_su2_6.
DR   InterPro; IPR010243; RNA_pol_bsu_bac.
DR   InterPro; IPR007121; RNA_pol_bsu_CS.
DR   InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR   InterPro; IPR007642; RNA_pol_Rpb2_2.
DR   InterPro; IPR007645; RNA_pol_Rpb2_3.
DR   InterPro; IPR007641; RNA_pol_Rpb2_7.
DR   InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR   PANTHER; PTHR20856; PTHR20856; 1.
DR   Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR   Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR   Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR   Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR   Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR   Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR   TIGRFAMs; TIGR02013; rpoB; 1.
DR   PROSITE; PS01166; RNA_POL_BETA; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q3ILP9.
DR   SWISS-2DPAGE; Q3ILP9.
KW   Complete proteome; DNA-directed RNA polymerase;
KW   Nucleotidyltransferase; Reference proteome; Transcription;
KW   Transferase.
FT   CHAIN         1   1341       DNA-directed RNA polymerase subunit beta.
FT                                /FTId=PRO_0000224093.
SQ   SEQUENCE   1341 AA;  149686 MW;  F8FAEFF47561091C CRC64;
     MAYSYSEKKR IRKDFGKRPQ VLDIPFLLST QLKSFKKFLV PDADGDHGLE AAFRSVFPIK
     SYSGNSELQY VSYRIGEPVF DVKECQIRGV TYSAPLRVKL RLVVMDKEAP GTVKDIKEQE
     VYMGEIPLMT DTGTFVINGT ERVIVSQLHR SPGVFFDNDR GKTHSSGKVL YNARVIPYRG
     SWLDFEFDAK DNLYVRIDRR RKLPASIILR ALEYSSEDIL GIFFDNTTFE VTDGKVLMEL
     VPSRLRGETA AFDIKSEDGE VFVESGRRVT ARHIKNIEKK GIKQLEVPHE YIIGRVLAKN
     YVDESTGEVV ANANDELTLE LMAELVKAGH TKIDTLYINE VDSGAYMSNT LNIDSSSSRL
     EALVEIYRMM RPGEPPTKDA AEALFQNLFF SEERYDLSTV GRMKFNSRVG YDTDTGPGTL
     SKEDIVSVMK VLIAIRNGVG DVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVRERLS
     LGDLDAIMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR
     ERAGFEVRDV HVTHYGRVCP IETPEGPNIG LINSLSTYAR TNDYGFLETP YRKVVDGVVT
     DEVDYLSAIE EGQFVIAQAN SNLTETNEFV DELIPCRHKG ESTFMGRMDQ QYMDVSPQQV
     ISVAAALIPF LEHDDANRAL MGSNMQRQAV PTLKADKPLV GTGIELTLAK DSGVTIVAKR
     GGEVMYCDAS RIVVNVHEEE RVPGEAGIDI YNLTKYTRSN QNTCINQKPT CMVGEPVTRG
     DVLADGPSTD LGDLALGQNL RVAFMPWNGY NFEDSILLSE RVVEEDRLTT IHIQELQCIA
     RDTKLGSEEI TADIPNVGES ALGKLDESGV VYIGAEVKSG DILVGKVTPK GETQLTPEEK
     LLRAIFGEKA SDVKDSSLRV PNSVTGTVID VQVFTRDGVE KDKRALEVEE MQLRDAKKDF
     NEEFRILEAG VLDRARKLLI AAGFDEDKLA LLNAEKLLTQ SLAEEDKQAE LEQLAAQYDE
     LKAEYDKKFE NKRRKITQGD DLAPGVLKIV KVYLAVKRCI QPGDKMAGRH GNKGVISTIV
     PVEDMPYDDK GRTVDIVLNP LGVPSRMNIG QILETHMGLA ARGIGERIEE MMKEQRELHE
     LRAFIKQAYE IGESRQVVDI DSFTDDEIRR LAENLKGGLP IATPAFDGAK ENEIKDMLEL
     AGYPRSGQVT LYDGRTGDQF ERQVTVGYMY MLKLNHLVDD KMHARSTGSY SLVTQQPLGG
     KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR TKMYKNIVDG NHKMEPGMPE
     SFNVLLKEIR SLGINIELEE N
//

If you have problems or comments...

PBIL Back to PBIL home page