(data stored in ACNUC7421 zone)

SWISSPROT: RPOC_PSEHT

ID   RPOC_PSEHT              Reviewed;        1390 AA.
AC   Q3ILP8;
DT   07-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT   08-NOV-2005, sequence version 1.
DT   07-JUN-2017, entry version 73.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE            Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE            EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};
DE   AltName: Full=RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
DE   AltName: Full=Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};
GN   Name=rpoC {ECO:0000255|HAMAP-Rule:MF_01322};
GN   OrderedLocusNames=PSHAa0223;
OS   Pseudoalteromonas haloplanktis (strain TAC 125).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=326442;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=TAC 125;
RX   PubMed=16169927; DOI=10.1101/gr.4126905;
RA   Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.N.,
RA   Cheung F., Cruveiller S., D'Amico S., Duilio A., Fang G., Feller G.,
RA   Ho C., Mangenot S., Marino G., Nilsson J., Parrilli E., Rocha E.P.C.,
RA   Rouy Z., Sekowska A., Tutino M.L., Vallenet D., von Heijne G.,
RA   Danchin A.;
RT   "Coping with cold: the genome of the versatile marine Antarctica
RT   bacterium Pseudoalteromonas haloplanktis TAC125.";
RL   Genome Res. 15:1325-1335(2005).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
CC       of DNA into RNA using the four ribonucleoside triphosphates as
CC       substrates. {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
CC       + RNA(n+1). {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1
CC       beta' and 1 omega subunit. When a sigma factor is associated with
CC       the core the holoenzyme is formed, which can initiate
CC       transcription. {ECO:0000255|HAMAP-Rule:MF_01322}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000255|HAMAP-Rule:MF_01322}.
DR   EMBL; CR954246; CAI85326.1; -; Genomic_DNA.
DR   RefSeq; WP_011326941.1; NC_007481.1.
DR   ProteinModelPortal; Q3ILP8; -.
DR   STRING; 326442.PSHAa0223; -.
DR   PRIDE; Q3ILP8; -.
DR   EnsemblBacteria; CAI85326; CAI85326; PSHAa0223.
DR   KEGG; pha:PSHAa0223; -.
DR   PATRIC; fig|326442.8.peg.214; -.
DR   eggNOG; ENOG4105D27; Bacteria.
DR   eggNOG; COG0086; LUCA.
DR   HOGENOM; HOG000218386; -.
DR   KO; K03046; -.
DR   OMA; YFAAYMI; -.
DR   OrthoDB; POG091H02K5; -.
DR   Proteomes; UP000006843; Chromosome I.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   HAMAP; MF_01322; RNApol_bact_RpoC; 1.
DR   InterPro; IPR012754; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 2.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   TIGRFAMs; TIGR02386; rpoC_TIGR; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q3ILP8.
DR   SWISS-2DPAGE; Q3ILP8.
KW   Complete proteome; DNA-directed RNA polymerase;
KW   Nucleotidyltransferase; Reference proteome; Transcription;
KW   Transferase.
FT   CHAIN         1   1390       DNA-directed RNA polymerase subunit
FT                                beta'.
FT                                /FTId=PRO_0000225564.
SQ   SEQUENCE   1390 AA;  154568 MW;  410F5D3340D20005 CRC64;
     MKDLLKFLKQ QNKTEEFDAI RIGLASPDMV RSWSYGEVKK PETINYRTFK PERDGLFCAR
     IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTLTKVRRD RMGHIDLASP VAHIWFLKSL
     PSRIGLMLDM TLRDIERVLY FESFVVTEPG MTTLERGQLL GEEEYLDALE EHGDEFEAKM
     GAEAVLDLLR ELDLAQLIAE MREELPTINS ETKRKKITKR LKLMESFHQS GNNPEWMIMT
     VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
     EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
     LKLHQCGLPK KMALELFKPF IYGKLERRGM ATTIKAAKKM VEREMPEVWD VLDEVIREHP
     VLLNRAPTLH RLGIQAFEPV LIEGKAIHLH PLVCAAYNAD FDGDQMAVHV PLTIEAQLEA
     RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDRINA KGEGAIFKDP KEAEKAYRSG
     NADLHAIVKV RISQSVKNEN GVVEDTITVI DTTVGRAILS LILPKGMPYE SINQPLGKKQ
     ISGLINECYR RLGLKDTVMF ADQIMYTGFH YAMKSGVSIG IDDLVIPPVK AQIIESAEAE
     VTEINQQFQS GLVTAGEKYN KVIDIWSRVN ENLSREMMSN LSKDTVINAQ GEEVEQASFN
     SVFMMADSGA RGSAAQIRQL AGMRGLMARP DGSIIETPIT ANFREGLNVL QYFISTHGAR
     KGLADTALKT ANSGYLTRRL VDVAQDLVIN EDDCGTEDGL TMKPLIEGGD VVEALRERVL
     GRVVAEDIVI PGTNTVLVER NIMLDEKLCD LLEEHSVDEV RVRSVITCDN DFGVCANCYG
     RDLARGHIIN AGESVGVIAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKTNGTLKL
     HNAKYVLNTD GKIAIISRST EITIIDSYGR EKERYKVPYG AVLTVQDNAE VQGNDIVATW
     DPHSHPIVLE HKSKVSFSDI DDSNTETQTD ELTGLTRIVV KDLSKANAKE PKLIIESEER
     GLQETRLPSF TTIEVVDGTT VNPGDVLARI PQEGSKTRDI TGGLPRVADL FEARKPKEPA
     ILAEVTGTIS FGKETKGKKR LVITPDEGDH YEEMIPKWRQ LNVFEGERVS KGEVIADGPE
     SPHDILRLRG VTHVANYIVN EVQEVYRLQG VKINDKHIET IIRQMLRKCT IMHGGDTDFL
     AGEQIEVARV NIANRDLEAQ GKIPAKFEIQ LMGITKASLA TESFISAASF QETTRVLTDA
     AVNGKSDELR GLKENVIVGR LIPAGTGFSY HQERMARRKQ RNVVEEQTVS AEEATQALTD
     ALNADLSGNQ
//

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