(data stored in ACNUC29543 zone)

SWISSPROT: A5GQ42_SYNR3

ID   A5GQ42_SYNR3            Unreviewed;       324 AA.
AC   A5GQ42;
DT   12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT   12-JUN-2007, sequence version 1.
DT   08-MAY-2019, entry version 76.
DE   SubName: Full=Alternative RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CAK27001.1};
GN   Name=rpoD {ECO:0000313|EMBL:CAK27001.1};
GN   OrderedLocusNames=SynRCC307_0098 {ECO:0000313|EMBL:CAK27001.1};
OS   Synechococcus sp. (strain RCC307).
OC   Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae;
OC   Synechococcus.
OX   NCBI_TaxID=316278 {ECO:0000313|EMBL:CAK27001.1, ECO:0000313|Proteomes:UP000001115};
RN   [1] {ECO:0000313|Proteomes:UP000001115}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RCC307 {ECO:0000313|Proteomes:UP000001115};
RG   Genoscope;
RL   Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|SAAS:SAAS00554769}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CT978603; CAK27001.1; -; Genomic_DNA.
DR   RefSeq; WP_011934516.1; NC_009482.1.
DR   STRING; 316278.SynRCC307_0098; -.
DR   EnsemblBacteria; CAK27001; CAK27001; SynRCC307_0098.
DR   KEGG; syr:SynRCC307_0098; -.
DR   eggNOG; ENOG4105WVZ; Bacteria.
DR   eggNOG; COG0568; LUCA.
DR   HOGENOM; HOG000270273; -.
DR   KO; K03087; -.
DR   OMA; NPKQREV; -.
DR   OrthoDB; 1565734at2; -.
DR   BioCyc; SSP316278:G1GJL-99-MONOMER; -.
DR   Proteomes; UP000001115; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR017848; RNA_pol_sigma_RpoD_cyanobac.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 2.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02997; Sig70-cyanoRpoD; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
PE   3: Inferred from homology;
DR   PRODOM; A5GQ42.
DR   SWISS-2DPAGE; A5GQ42.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001115};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001115};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN      117    130       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00715}.
SQ   SEQUENCE   324 AA;  36748 MW;  73F29F54351B41E4 CRC64;
     MATTAVDQRP PVDGDLVRSY LRDIGRVPLL SHEQEITLGR QVQELVRLEE AEAEFKMRQG
     HEPSREELAS SFGISPAVLR RRLINGRRAK ERMVAANLRL VVSVAKKYTK RNMELLDLIQ
     EGTIGLVRGV EKFDPTRGYK FSTYAYWWIR QGITRAIAEK SRTIRLPIHI TETLNKLKKG
     QRELSQELGR TPTVGELAEF LELPEPEVKD LLSRARQPVS LEMKVGDSDD TELCELLQND
     APMPHELVDG DCLKGDMRSL LEQLPPLQGR VLKMRYGIDV EEPMSLTGIG RELGMSRDRV
     RNLERDGLAG LRRLSEAVEA YVVA
//

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