(data stored in SCRATCH zone)

SWISSPROT: C0H4W8_PLAF7

ID   C0H4W8_PLAF7            Unreviewed;      1510 AA.
AC   C0H4W8;
DT   05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   08-JUN-2016, sequence version 2.
DT   11-DEC-2019, entry version 46.
DE   SubName: Full=Phosphorylated CTD interacting factor 1 WW domain-containing protein, putative {ECO:0000313|EMBL:CAX64146.2};
GN   ORFNames=PF3D7_0822200 {ECO:0000313|EMBL:CAX64146.2};
OS   Plasmodium falciparum (isolate 3D7).
OC   Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
OC   Plasmodiidae; Plasmodium; Plasmodium (Laverania).
OX   NCBI_TaxID=36329 {ECO:0000313|EMBL:CAX64146.2, ECO:0000313|Proteomes:UP000001450};
RN   [1] {ECO:0000313|Proteomes:UP000001450}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate 3D7 {ECO:0000313|Proteomes:UP000001450};
RX   PubMed=12368864; DOI=10.1038/nature01097;
RA   Gardner M.J., Hall N., Fung E., White O., Berriman M., Hyman R.W.,
RA   Carlton J.M., Pain A., Nelson K.E., Bowman S., Paulsen I.T., James K.D.,
RA   Eisen J.A., Rutherford K.M., Salzberg S.L., Craig A., Kyes S., Chan M.-S.,
RA   Nene V., Shallom S.J., Suh B., Peterson J., Angiuoli S., Pertea M.,
RA   Allen J., Selengut J., Haft D., Mather M.W., Vaidya A.B., Martin D.M.A.,
RA   Fairlamb A.H., Fraunholz M.J., Roos D.S., Ralph S.A., McFadden G.I.,
RA   Cummings L.M., Subramanian G.M., Mungall C., Venter J.C., Carucci D.J.,
RA   Hoffman S.L., Newbold C., Davis R.W., Fraser C.M., Barrell B.G.;
RT   "Genome sequence of the human malaria parasite Plasmodium falciparum.";
RL   Nature 419:498-511(2002).
RN   [2] {ECO:0000313|Proteomes:UP000001450}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate 3D7 {ECO:0000313|Proteomes:UP000001450};
RX   PubMed=12368867; DOI=10.1038/nature01095;
RA   Hall N., Pain A., Berriman M., Churcher C.M., Harris B., Harris D.,
RA   Mungall K.L., Bowman S., Atkin R., Baker S., Barron A., Brooks K.,
RA   Buckee C.O., Burrows C., Cherevach I., Chillingworth C., Chillingworth T.,
RA   Christodoulou Z., Clark L., Clark R., Corton C., Cronin A., Davies R.M.,
RA   Davis P., Dear P., Dearden F., Doggett J., Feltwell T., Goble A.,
RA   Goodhead I., Gwilliam R., Hamlin N., Hance Z., Harper D., Hauser H.,
RA   Hornsby T., Holroyd S., Horrocks P., Humphray S., Jagels K., James K.D.,
RA   Johnson D., Kerhornou A., Knights A., Konfortov B., Kyes S., Larke N.,
RA   Lawson D., Lennard N., Line A., Maddison M., Mclean J., Mooney P.,
RA   Moule S., Murphy L., Oliver K., Ormond D., Price C., Quail M.A.,
RA   Rabbinowitsch E., Rajandream M.A., Rutter S., Rutherford K.M., Sanders M.,
RA   Simmonds M., Seeger K., Sharp S., Smith R., Squares R., Squares S.,
RA   Stevens K., Taylor K., Tivey A., Unwin L., Whitehead S., Woodward J.R.,
RA   Sulston J.E., Craig A., Newbold C., Barrell B.G.;
RT   "Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.";
RL   Nature 419:527-531(2002).
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DR   EMBL; AL844507; CAX64146.2; -; Genomic_DNA.
DR   SMR; C0H4W8; -.
DR   EnsemblProtists; CAX64146; CAX64146; PF3D7_0822200.
DR   GeneDB; PF3D7_0822200.1:pep; -.
DR   EuPathDB; PlasmoDB:PF3D7_0822200; -.
DR   HOGENOM; HOG000184614; -.
DR   InParanoid; C0H4W8; -.
DR   Proteomes; UP000001450; Chromosome 8.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0016422; F:mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; IEA:InterPro.
DR   GO; GO:0099122; F:RNA polymerase II C-terminal domain binding; IEA:InterPro.
DR   InterPro; IPR039881; PCIF1-like.
DR   InterPro; IPR022035; PCIF1_WW.
DR   PANTHER; PTHR21727; PTHR21727; 1.
DR   Pfam; PF12237; PCIF1_WW; 1.
PE   4: Predicted;
DR   PRODOM; C0H4W8.
DR   SWISS-2DPAGE; C0H4W8.
KW   Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001450};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        557..579
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        676..693
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        898..916
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        994..1012
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1224..1241
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1247..1269
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1307..1326
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          1304..1458
FT                   /note="PCIF1_WW"
FT                   /evidence="ECO:0000259|Pfam:PF12237"
FT   COILED          393..431
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   1510 AA;  186588 MW;  DE5CFDFF514DE172 CRC64;
     MLDIKDEYKL QDEFIKLRRI LINIFCYELF YSPNKKLKNR LLYIIRKSEC YKKCCFLFNG
     EYNNVHNDDE FCVCAYKKYR QKINKIFKRF MMKKNKYNKR KKKEKDNKLY TYCELRKNIC
     FMEKEIFNRL FFNINIRYSN YVIERKYMYL YFLFIKFMGV LKKKKKQYII NNNNNNVSKK
     DKPCCFIDSL LSHFCIKQFS LFINYLLKGK RDNIYFELLK GEIKSTFFNL NIDKNRYKKE
     NVHIYQKKYT NFCHSIVIYK YKPIIKYEKK IHNNINKKKI YIYYYIKYLL QKKNNSYNFS
     INRFYYIKHR NRTQDIFLNI PKKKNIYIFS VNINSFKCVI NKFIYNDFYY NLLNSIFYSI
     INIPLQYVCD TYIYYLYCYD SDLKNDENLL CVHEEYNNNI NKNMENNNNI NKNMENNNNI
     NKNMVNNYNN NNDIYNDIYN DIYNYNHIYN YNHIYNYNHI YNYNHIYNDN NKTDKCNNTC
     NIKKHKDKFI HFLKYLFISS DQYEKDIKNN LPYSQRSFLF YFINHIKGLL KNNIRNMLYL
     TISNVHKIIY NDMSLEYIFY LFLFYFIFLD IKIYCTIFIN LEKTSLSYEE IKIFKYFIKG
     STDHIKNEKT KKKKKKKSNI KNDICNNIKN TNVYNPTKNY NYNNNNNEKV SDYFHICLIC
     SYNILNQDKI FMMEKIKILF YIIYYILYIN HFSCDKNQHD TFLRYFLFYT FQKKSTLFNI
     YPLLSKTQKW LPDEYKDNLL INYVVHTCCS FTKKKIQKDL KKYLIKLLIS KKHKYYQYFI
     KLLNEEDKNI AYFKKDIFKN THAINEYKNI HYNKNTKNEQ IYNNFINNNY KVKYNHEIIS
     SINKNSFVKD QRIYLYNKQI LYYQQQFYNY VFYMFRTFYE NLKLFLLPLL QNIYHNRLIY
     INVYMYLFMI RSYYYIQKKK KINIKNVKCE KCKIYKKCKK YQNNICYYYY YYYYYYRNNN
     YNNKLLINYS SEGQVLNIKD ITCTKKSKER KQSIILKYYI INLCIHLYNY YLFMLKKNKV
     KKCNKMFLRK YLKLLLYIGR NILHICTHPQ HYIPFLCKMI NFVNMYIYKY VECYNDISCI
     YSIKNEKMKY KNRSPSILYR FFLITKQTTN MSIHNIKKKK KKKNFCKKNK TYFIITNGNH
     NIYLEKYIKK ILLNKGVQNI FHNIYVHIKE DSFSVQTKQN FIIFKLKYKE DDNTNTLQNI
     YYQINGKKYF VFDNLYKLKK TYKINYIILC LLFYRYCYFF YTYNSFIFSY LFTNIFCICI
     DCLNKYVIVK NCQDKKKERC QDNSHDCFYK QNGILKKNRN HILIKNFYYL IFFLLIRYHT
     IIGNISHSGL QNCIPKRIMN ALKKYMNVNV ECFSSPFNSV LENYCSFFSD IDIFFGSKGD
     FFKYTLKSGV YEVNPPFDIF LINKLIIYIL FKLKMDVNHL TFFLIIPYMK DINYYYELLF
     SSSYLSHFFI LQRNTYTFST RLFEGRENEY ISTCDCFVFI LQNKKAQIEN RIPKKRVLKI
     KKLWQNVDHI
//

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