(data stored in SCRATCH zone)

SWISSPROT: C0H4X1_PLAF7

ID   C0H4X1_PLAF7            Unreviewed;       324 AA.
AC   C0H4X1;
DT   05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   05-MAY-2009, sequence version 1.
DT   11-DEC-2019, entry version 73.
DE   SubName: Full=U5 small nuclear ribonucleoprotein 40 kDa protein, putative {ECO:0000313|EMBL:CAX64149.1};
GN   ORFNames=PF3D7_0822800 {ECO:0000313|EMBL:CAX64149.1};
OS   Plasmodium falciparum (isolate 3D7).
OC   Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
OC   Plasmodiidae; Plasmodium; Plasmodium (Laverania).
OX   NCBI_TaxID=36329 {ECO:0000313|EMBL:CAX64149.1, ECO:0000313|Proteomes:UP000001450};
RN   [1] {ECO:0000313|Proteomes:UP000001450}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate 3D7 {ECO:0000313|Proteomes:UP000001450};
RX   PubMed=12368864; DOI=10.1038/nature01097;
RA   Gardner M.J., Hall N., Fung E., White O., Berriman M., Hyman R.W.,
RA   Carlton J.M., Pain A., Nelson K.E., Bowman S., Paulsen I.T., James K.D.,
RA   Eisen J.A., Rutherford K.M., Salzberg S.L., Craig A., Kyes S., Chan M.-S.,
RA   Nene V., Shallom S.J., Suh B., Peterson J., Angiuoli S., Pertea M.,
RA   Allen J., Selengut J., Haft D., Mather M.W., Vaidya A.B., Martin D.M.A.,
RA   Fairlamb A.H., Fraunholz M.J., Roos D.S., Ralph S.A., McFadden G.I.,
RA   Cummings L.M., Subramanian G.M., Mungall C., Venter J.C., Carucci D.J.,
RA   Hoffman S.L., Newbold C., Davis R.W., Fraser C.M., Barrell B.G.;
RT   "Genome sequence of the human malaria parasite Plasmodium falciparum.";
RL   Nature 419:498-511(2002).
RN   [2] {ECO:0000313|Proteomes:UP000001450}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate 3D7 {ECO:0000313|Proteomes:UP000001450};
RX   PubMed=12368867; DOI=10.1038/nature01095;
RA   Hall N., Pain A., Berriman M., Churcher C.M., Harris B., Harris D.,
RA   Mungall K.L., Bowman S., Atkin R., Baker S., Barron A., Brooks K.,
RA   Buckee C.O., Burrows C., Cherevach I., Chillingworth C., Chillingworth T.,
RA   Christodoulou Z., Clark L., Clark R., Corton C., Cronin A., Davies R.M.,
RA   Davis P., Dear P., Dearden F., Doggett J., Feltwell T., Goble A.,
RA   Goodhead I., Gwilliam R., Hamlin N., Hance Z., Harper D., Hauser H.,
RA   Hornsby T., Holroyd S., Horrocks P., Humphray S., Jagels K., James K.D.,
RA   Johnson D., Kerhornou A., Knights A., Konfortov B., Kyes S., Larke N.,
RA   Lawson D., Lennard N., Line A., Maddison M., Mclean J., Mooney P.,
RA   Moule S., Murphy L., Oliver K., Ormond D., Price C., Quail M.A.,
RA   Rabbinowitsch E., Rajandream M.A., Rutter S., Rutherford K.M., Sanders M.,
RA   Simmonds M., Seeger K., Sharp S., Smith R., Squares R., Squares S.,
RA   Stevens K., Taylor K., Tivey A., Unwin L., Whitehead S., Woodward J.R.,
RA   Sulston J.E., Craig A., Newbold C., Barrell B.G.;
RT   "Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.";
RL   Nature 419:527-531(2002).
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DR   EMBL; AL844507; CAX64149.1; -; Genomic_DNA.
DR   RefSeq; XP_002808871.1; XM_002808825.1.
DR   PRIDE; C0H4X1; -.
DR   EnsemblProtists; CAX64149; CAX64149; PF3D7_0822800.
DR   GeneDB; PF3D7_0822800.1:pep; -.
DR   GeneID; 2655384; -.
DR   KEGG; pfa:PF3D7_0822800; -.
DR   EuPathDB; PlasmoDB:PF3D7_0822800; -.
DR   HOGENOM; HOG000091644; -.
DR   InParanoid; C0H4X1; -.
DR   KO; K12857; -.
DR   OMA; CENYGVL; -.
DR   PhylomeDB; C0H4X1; -.
DR   Proteomes; UP000001450; Chromosome 8.
DR   GO; GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:GeneDB.
DR   GO; GO:0000375; P:RNA splicing, via transesterification reactions; ISS:GeneDB.
DR   Gene3D; 2.130.10.10; -; 1.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR001680; WD40_repeat.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR017986; WD40_repeat_dom.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   Pfam; PF00400; WD40; 5.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 7.
DR   SUPFAM; SSF50978; SSF50978; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 2.
DR   PROSITE; PS50082; WD_REPEATS_2; 5.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE   4: Predicted;
DR   PRODOM; C0H4X1.
DR   SWISS-2DPAGE; C0H4X1.
KW   Reference proteome {ECO:0000313|Proteomes:UP000001450};
KW   Ribonucleoprotein {ECO:0000313|EMBL:CAX64149.1};
KW   Viral nucleoprotein {ECO:0000313|EMBL:CAX64149.1};
KW   Virion {ECO:0000313|EMBL:CAX64149.1};
KW   WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221}.
FT   DOMAIN          33..324
FT                   /note="WD_REPEATS_REGION"
FT                   /evidence="ECO:0000259|PROSITE:PS50294"
FT   REPEAT          33..66
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          76..117
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          118..158
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          200..234
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          291..324
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ   SEQUENCE   324 AA;  37086 MW;  F79EBEF0A14AB844 CRC64;
     MALIKADTYV LERDENNEVE ERKTGLFSPT MLINSHKGEV YSINFSSDGK YIASSSFDMT
     IMVHNVYNEC ETIGVLRGHK NAVLQAKWLQ DDNYICSASA DHKLFLWDVE CESKLRSFKG
     HDNIVNGLDI INHNLFVSCS DDNTLKFWDI RSKWAVHIIK HDFPLLSVCS DKKGEFLFTS
     CVDNTIKKYD CKNYKLKDTF IGHKDYITGL DINKDETMLA SISADESICF WDIQPFSCEE
     KLLFQLNSPK YNIDYNLIKL SFNNDNLLAC GSGDNYLYIY DYKQKILKYS LPGHTSTIND
     VAFHPVEDIV ASCSSDHTIF LGEI
//

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