(data stored in ACNUC1104 zone)

SWISSPROT: D3UY14_XENBS

ID   D3UY14_XENBS            Unreviewed;       139 AA.
AC   D3UY14;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   08-MAY-2019, entry version 54.
DE   RecName: Full=D-ribose pyranase {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00015077};
DE            EC=5.4.99.62 {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00342828};
GN   Name=rbsD {ECO:0000256|HAMAP-Rule:MF_01661,
GN   ECO:0000313|EMBL:CBJ79192.1};
GN   OrderedLocusNames=XBJ1_0037 {ECO:0000313|EMBL:CBJ79192.1};
OS   Xenorhabdus bovienii (strain SS-2004).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406818 {ECO:0000313|EMBL:CBJ79192.1, ECO:0000313|Proteomes:UP000002045};
RN   [1] {ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|Proteomes:UP000002045};
RA   Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S.,
RA   Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P.,
RA   Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S.,
RA   Suen G.;
RT   "Complete genome sequence of Xenorhabdus nematophila (strain ATCC
RT   19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6).";
RL   Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CBJ79192.1, ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|EMBL:CBJ79192.1,
RC   ECO:0000313|Proteomes:UP000002045};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
CC   -!- FUNCTION: Catalyzes the interconversion of beta-pyran and beta-
CC       furan forms of D-ribose. {ECO:0000256|HAMAP-Rule:MF_01661,
CC       ECO:0000256|SAAS:SAAS00342831}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=beta-D-ribopyranose = beta-D-ribofuranose;
CC         Xref=Rhea:RHEA:25432, ChEBI:CHEBI:27476, ChEBI:CHEBI:47002;
CC         EC=5.4.99.62; Evidence={ECO:0000256|HAMAP-Rule:MF_01661,
CC         ECO:0000256|SAAS:SAAS01117947};
CC   -!- PATHWAY: Carbohydrate metabolism; D-ribose degradation; D-ribose
CC       5-phosphate from beta-D-ribopyranose: step 1/2.
CC       {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00011494}.
CC   -!- SUBUNIT: Homodecamer. {ECO:0000256|HAMAP-Rule:MF_01661,
CC       ECO:0000256|SAAS:SAAS00342803}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01661,
CC       ECO:0000256|SAAS:SAAS00015081}.
CC   -!- SIMILARITY: Belongs to the RbsD / FucU family. RbsD subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00539081}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; FN667741; CBJ79192.1; -; Genomic_DNA.
DR   RefSeq; WP_012986665.1; NC_013892.1.
DR   STRING; 406818.XBJ1_0037; -.
DR   EnsemblBacteria; CBJ79192; CBJ79192; XBJ1_0037.
DR   GeneID; 8829664; -.
DR   KEGG; xbo:XBJ1_0037; -.
DR   PATRIC; fig|406818.4.peg.33; -.
DR   eggNOG; ENOG4105MRB; Bacteria.
DR   eggNOG; COG1869; LUCA.
DR   HOGENOM; HOG000219040; -.
DR   KO; K06726; -.
DR   OMA; IIRTGEC; -.
DR   BioCyc; XBOV406818:XBJ1_RS00165-MONOMER; -.
DR   UniPathway; UPA00916; UER00888.
DR   Proteomes; UP000002045; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0016872; F:intramolecular lyase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0048029; F:monosaccharide binding; IEA:InterPro.
DR   GO; GO:0019303; P:D-ribose catabolic process; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.1650.10; -; 1.
DR   HAMAP; MF_01661; D_rib_pyranase; 1.
DR   InterPro; IPR023064; D-ribose_pyranase.
DR   InterPro; IPR023750; RbsD-like_sf.
DR   InterPro; IPR007721; RbsD_FucU.
DR   PANTHER; PTHR37831; PTHR37831; 1.
DR   Pfam; PF05025; RbsD_FucU; 1.
DR   SUPFAM; SSF102546; SSF102546; 1.
PE   3: Inferred from homology;
DR   PRODOM; D3UY14.
DR   SWISS-2DPAGE; D3UY14.
KW   Carbohydrate metabolism {ECO:0000256|HAMAP-Rule:MF_01661,
KW   ECO:0000256|SAAS:SAAS00421463};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002045};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01661,
KW   ECO:0000256|SAAS:SAAS00421456};
KW   Isomerase {ECO:0000256|HAMAP-Rule:MF_01661,
KW   ECO:0000256|SAAS:SAAS00421475};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002045}.
FT   REGION      128    130       Substrate binding. {ECO:0000256|HAMAP-
FT                                Rule:MF_01661}.
FT   ACT_SITE     20     20       Proton donor. {ECO:0000256|HAMAP-Rule:
FT                                MF_01661}.
FT   BINDING      28     28       Substrate. {ECO:0000256|HAMAP-Rule:
FT                                MF_01661}.
FT   BINDING     106    106       Substrate. {ECO:0000256|HAMAP-Rule:
FT                                MF_01661}.
SQ   SEQUENCE   139 AA;  15240 MW;  8794852A2C47890A CRC64;
     MKKGVLLHSD ISAVISRLGH TDQITISDAG LPIPLSTQRI DLALTQGIPD LMSVFDVVVQ
     EVQVEAAILA TEMIDHNPQI HEQIIKRIAE LETKQGNAIA IEYVNHNILK EKTEKSKAII
     RTGECSPYAN ILLCSGVTF
//

If you have problems or comments...

PBIL Back to PBIL home page