(data stored in ACNUC1104 zone)

SWISSPROT: D3UYK7_XENBS

ID   D3UYK7_XENBS            Unreviewed;        91 AA.
AC   D3UYK7;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   08-MAY-2019, entry version 55.
DE   RecName: Full=DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00298393};
DE            Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};
DE            EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};
DE   AltName: Full=RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};
DE   AltName: Full=Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366};
GN   Name=rpoZ {ECO:0000256|HAMAP-Rule:MF_00366,
GN   ECO:0000313|EMBL:CBJ79385.1};
GN   OrderedLocusNames=XBJ1_0234 {ECO:0000313|EMBL:CBJ79385.1};
OS   Xenorhabdus bovienii (strain SS-2004).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406818 {ECO:0000313|EMBL:CBJ79385.1, ECO:0000313|Proteomes:UP000002045};
RN   [1] {ECO:0000313|EMBL:CBJ79385.1, ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|EMBL:CBJ79385.1,
RC   ECO:0000313|Proteomes:UP000002045};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
CC   -!- FUNCTION: Promotes RNA polymerase assembly. Latches the N- and C-
CC       terminal regions of the beta' subunit thereby facilitating its
CC       interaction with the beta and alpha subunits. {ECO:0000256|HAMAP-
CC       Rule:MF_00366, ECO:0000256|SAAS:SAAS00387808}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:11128, Rhea:RHEA-
CC         COMP:11129, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557,
CC         ChEBI:CHEBI:83400; EC=2.7.7.6; Evidence={ECO:0000256|HAMAP-
CC         Rule:MF_00366, ECO:0000256|SAAS:SAAS01125029};
CC   -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1
CC       beta' and 1 omega subunit. When a sigma factor is associated with
CC       the core the holoenzyme is formed, which can initiate
CC       transcription. {ECO:0000256|HAMAP-Rule:MF_00366,
CC       ECO:0000256|SAAS:SAAS00387804}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase subunit omega family.
CC       {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00573536}.
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DR   EMBL; FN667741; CBJ79385.1; -; Genomic_DNA.
DR   RefSeq; WP_012986848.1; NC_013892.1.
DR   STRING; 406818.XBJ1_0234; -.
DR   EnsemblBacteria; CBJ79385; CBJ79385; XBJ1_0234.
DR   GeneID; 8829857; -.
DR   KEGG; xbo:XBJ1_0234; -.
DR   PATRIC; fig|406818.4.peg.215; -.
DR   eggNOG; ENOG4105VFG; Bacteria.
DR   eggNOG; COG1758; LUCA.
DR   HOGENOM; HOG000245721; -.
DR   KO; K03060; -.
DR   OMA; LENVDNR; -.
DR   BioCyc; XBOV406818:XBJ1_RS01015-MONOMER; -.
DR   Proteomes; UP000002045; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.90.940.10; -; 1.
DR   HAMAP; MF_00366; RNApol_bact_RpoZ; 1.
DR   InterPro; IPR003716; DNA-dir_RNA_pol_omega.
DR   InterPro; IPR006110; Pol_omega/K/RPB6.
DR   InterPro; IPR012293; RNAP_RPB6_omega.
DR   InterPro; IPR036161; RPB6/omega-like_sf.
DR   PANTHER; PTHR34476; PTHR34476; 1.
DR   Pfam; PF01192; RNA_pol_Rpb6; 1.
DR   SMART; SM01409; RNA_pol_Rpb6; 1.
DR   SUPFAM; SSF63562; SSF63562; 1.
DR   TIGRFAMs; TIGR00690; rpoZ; 1.
PE   3: Inferred from homology;
DR   PRODOM; D3UYK7.
DR   SWISS-2DPAGE; D3UYK7.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002045};
KW   DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00366,
KW   ECO:0000256|SAAS:SAAS00882862};
KW   Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00366,
KW   ECO:0000256|SAAS:SAAS00464771, ECO:0000313|EMBL:CBJ79385.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002045};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00366,
KW   ECO:0000256|SAAS:SAAS00882870};
KW   Transferase {ECO:0000256|HAMAP-Rule:MF_00366,
KW   ECO:0000256|SAAS:SAAS00464761, ECO:0000313|EMBL:CBJ79385.1}.
SQ   SEQUENCE   91 AA;  10196 MW;  14C744EC14D8C660 CRC64;
     MARVTVQDAV EKIGNRFDLV LVAARRARQL QSGGKDPLVA EENDKMTVIA LREIEQGLIN
     NKILDVRDRQ EQQEQDAAEI KAVSVIAEGR R
//

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