(data stored in ACNUC1104 zone)

SWISSPROT: D3UZ36_XENBS

ID   D3UZ36_XENBS            Unreviewed;       525 AA.
AC   D3UZ36;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   08-MAY-2019, entry version 63.
DE   SubName: Full=Sigma N (Sigma 54)-dependent transcriptional activator of RNA 3'-terminal phosphate cyclase (EBP familiy) {ECO:0000313|EMBL:CBJ79564.1};
GN   Name=rtcR {ECO:0000313|EMBL:CBJ79564.1};
GN   OrderedLocusNames=XBJ1_0414 {ECO:0000313|EMBL:CBJ79564.1};
OS   Xenorhabdus bovienii (strain SS-2004).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406818 {ECO:0000313|EMBL:CBJ79564.1, ECO:0000313|Proteomes:UP000002045};
RN   [1] {ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|Proteomes:UP000002045};
RA   Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S.,
RA   Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P.,
RA   Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S.,
RA   Suen G.;
RT   "Complete genome sequence of Xenorhabdus nematophila (strain ATCC
RT   19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6).";
RL   Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CBJ79564.1, ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|EMBL:CBJ79564.1,
RC   ECO:0000313|Proteomes:UP000002045};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
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DR   EMBL; FN667741; CBJ79564.1; -; Genomic_DNA.
DR   RefSeq; WP_012987021.1; NC_013892.1.
DR   STRING; 406818.XBJ1_0414; -.
DR   EnsemblBacteria; CBJ79564; CBJ79564; XBJ1_0414.
DR   GeneID; 8830038; -.
DR   KEGG; xbo:XBJ1_0414; -.
DR   PATRIC; fig|406818.4.peg.383; -.
DR   eggNOG; ENOG4105CYB; Bacteria.
DR   eggNOG; COG4650; LUCA.
DR   HOGENOM; HOG000145396; -.
DR   KO; K14414; -.
DR   OMA; CWFLLTE; -.
DR   BioCyc; XBOV406818:XBJ1_RS01835-MONOMER; -.
DR   Proteomes; UP000002045; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR009715; RtcR.
DR   InterPro; IPR017183; Sigma54_dep_tscrpt_act_RtcR.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   PANTHER; PTHR32071:SF14; PTHR32071:SF14; 1.
DR   Pfam; PF06956; RtcR; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PIRSF; PIRSF037354; Txn_actvtr_RtcR; 1.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; D3UZ36.
DR   SWISS-2DPAGE; D3UZ36.
KW   ATP-binding {ECO:0000256|SAAS:SAAS00473007};
KW   Complete proteome {ECO:0000313|Proteomes:UP000002045};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00421512};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS00473126};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002045};
KW   Transcription {ECO:0000256|SAAS:SAAS00421028};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00421451}.
FT   DOMAIN      186    424       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
SQ   SEQUENCE   525 AA;  60489 MW;  427463862B7D40C0 CRC64;
     MKRRVVIGIL GTKLDRRGKK ANRWTKWRPT IGMCQQAELP IDRLELLYQT NDYGLAQRVK
     EDIAETSPKT KVVLQELKIE DAWDFEEVYT AQLDFAVRYP FDTENEEYLV HITTGTHVAQ
     ICWFLLTEAR YLPAQLLQTS PRNGDRESHP EGNYTIIDLN LSRYTTLTSR FLHEQQEQVA
     FLKSGIATRN ANFNRLIDQV ERVALRSSAP ILLTGPTGAG KSFLARRIYQ LRQSRHLIQG
     RFVEVNCATL RGDNAMSTLF GHVKGAFTGA IQPRTGLLRE ADGGILFLDE VAELGLDEQA
     MLLKAIEEKS FLPYGSDKEV HSNFQLIAGT HRDLHTWVVQ GKFREDLYAR INMWTYQLPG
     LAQRREDIEP NIEYELARYA QMQQTQVRFD KEARLIYLHF ACSEQAQWRG NFRELGASVT
     RMATFAENGR INQHLVEEEI TRLKQNWQDN GLSSLLPNHL PEVDLFDRQQ LETVIKICRE
     SASLSEAGRK LFAVSRQQKK QPNDADRLRK YLARFGLGWD SIQND
//

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