(data stored in ACNUC1104 zone)

SWISSPROT: D3UZB3_XENBS

ID   D3UZB3_XENBS            Unreviewed;       199 AA.
AC   D3UZB3;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   08-MAY-2019, entry version 47.
DE   RecName: Full=Ribosomal RNA small subunit methyltransferase D {ECO:0000256|PIRNR:PIRNR004553};
DE            EC=2.1.1.171 {ECO:0000256|PIRNR:PIRNR004553};
GN   Name=yhhF {ECO:0000313|EMBL:CBJ79695.1};
GN   OrderedLocusNames=XBJ1_0551 {ECO:0000313|EMBL:CBJ79695.1};
OS   Xenorhabdus bovienii (strain SS-2004).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406818 {ECO:0000313|EMBL:CBJ79695.1, ECO:0000313|Proteomes:UP000002045};
RN   [1] {ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|Proteomes:UP000002045};
RA   Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S.,
RA   Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P.,
RA   Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S.,
RA   Suen G.;
RT   "Complete genome sequence of Xenorhabdus nematophila (strain ATCC
RT   19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6).";
RL   Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CBJ79695.1, ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|EMBL:CBJ79695.1,
RC   ECO:0000313|Proteomes:UP000002045};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
CC   -!- FUNCTION: Specifically methylates the guanine in position 966 of
CC       16S rRNA in the assembled 30S particle.
CC       {ECO:0000256|PIRNR:PIRNR004553}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=guanosine(966) in 16S rRNA + S-adenosyl-L-methionine =
CC         H(+) + N(2)-methylguanosine(966) in 16S rRNA + S-adenosyl-L-
CC         homocysteine; Xref=Rhea:RHEA:23548, Rhea:RHEA-COMP:10211,
CC         Rhea:RHEA-COMP:10212, ChEBI:CHEBI:15378, ChEBI:CHEBI:57856,
CC         ChEBI:CHEBI:59789, ChEBI:CHEBI:74269, ChEBI:CHEBI:74481;
CC         EC=2.1.1.171; Evidence={ECO:0000256|PIRNR:PIRNR004553};
CC   -!- SIMILARITY: Belongs to the methyltransferase superfamily. RsmD
CC       family. {ECO:0000256|PIRNR:PIRNR004553}.
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DR   EMBL; FN667741; CBJ79695.1; -; Genomic_DNA.
DR   RefSeq; WP_012987149.1; NC_013892.1.
DR   STRING; 406818.XBJ1_0551; -.
DR   EnsemblBacteria; CBJ79695; CBJ79695; XBJ1_0551.
DR   GeneID; 8830173; -.
DR   KEGG; xbo:XBJ1_0551; -.
DR   PATRIC; fig|406818.4.peg.504; -.
DR   eggNOG; ENOG4106H78; Bacteria.
DR   eggNOG; COG0742; LUCA.
DR   HOGENOM; HOG000050676; -.
DR   KO; K08316; -.
DR   OMA; MGAEALC; -.
DR   BioCyc; XBOV406818:XBJ1_RS02385-MONOMER; -.
DR   Proteomes; UP000002045; Chromosome.
DR   GO; GO:0052913; F:16S rRNA (guanine(966)-N(2))-methyltransferase activity; IEA:UniProtKB-EC.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   InterPro; IPR002052; DNA_methylase_N6_adenine_CS.
DR   InterPro; IPR004398; RNA_MeTrfase_RsmD.
DR   InterPro; IPR029063; SAM-dependent_MTases.
DR   PIRSF; PIRSF004553; CHP00095; 1.
DR   SUPFAM; SSF53335; SSF53335; 1.
DR   TIGRFAMs; TIGR00095; TIGR00095; 1.
DR   PROSITE; PS00092; N6_MTASE; 1.
PE   3: Inferred from homology;
DR   PRODOM; D3UZB3.
DR   SWISS-2DPAGE; D3UZB3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002045};
KW   Methyltransferase {ECO:0000256|PIRNR:PIRNR004553,
KW   ECO:0000313|EMBL:CBJ79695.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002045};
KW   rRNA processing {ECO:0000256|PIRNR:PIRNR004553};
KW   S-adenosyl-L-methionine {ECO:0000256|PIRNR:PIRNR004553};
KW   Transferase {ECO:0000256|PIRNR:PIRNR004553,
KW   ECO:0000313|EMBL:CBJ79695.1}.
SQ   SEQUENCE   199 AA;  22227 MW;  AB4AAB04A8F8E5B8 CRC64;
     MTKKSQSASL GQIRIIGGKW RGRKLPVPDS EGLRPTTDRV RETLFNWLMP IIQEARCLDC
     FSGSGALGIE ALSRNASHAT LLEYDRHVAK QLSANLALLK AENANVVQGN TLQYLNQTGT
     PFDVVFLDPP FRKGMLVETI NLLEANGWLA EESWIYVEAE SESTATEAPA NWQLHREKIA
     GQVAYRLYIR RQQSGDRSA
//

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