(data stored in ACNUC7421 zone)

SWISSPROT: D3VLS6_XENNA

ID   D3VLS6_XENNA            Unreviewed;       729 AA.
AC   D3VLS6;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   08-MAY-2019, entry version 60.
DE   SubName: Full=Putative DNA topoisomerase III, type 1 {ECO:0000313|EMBL:CBJ92878.1};
DE            EC=5.99.1.2 {ECO:0000313|EMBL:CBJ92878.1};
GN   ORFNames=XNC1_p0010 {ECO:0000313|EMBL:CBJ92878.1};
OS   Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 /
OS   NCIB 9965 / AN6).
OG   Plasmid XNC1_p {ECO:0000313|EMBL:CBJ92878.1,
OG   ECO:0000313|Proteomes:UP000008075}.
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406817 {ECO:0000313|EMBL:CBJ92878.1, ECO:0000313|Proteomes:UP000008075};
RN   [1] {ECO:0000313|EMBL:CBJ92878.1, ECO:0000313|Proteomes:UP000008075}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6
RC   {ECO:0000313|Proteomes:UP000008075};
RC   PLASMID=Plasmid XNC1_p {ECO:0000313|Proteomes:UP000008075};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; FN667743; CBJ92878.1; -; Genomic_DNA.
DR   RefSeq; WP_013141536.1; NC_014170.1.
DR   STRING; 406817.XNC1_p0010; -.
DR   EnsemblBacteria; CBJ92878; CBJ92878; XNC1_p0010.
DR   KEGG; xne:XNC1_p0010; -.
DR   eggNOG; ENOG4108IYH; Bacteria.
DR   eggNOG; COG0550; LUCA.
DR   HOGENOM; HOG000086848; -.
DR   KO; K03169; -.
DR   OMA; TAEWENR; -.
DR   BioCyc; XNEM406817:GHY4-4418-MONOMER; -.
DR   Proteomes; UP000008075; Plasmid XNC1_p.
DR   GO; GO:0005694; C:chromosome; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003917; F:DNA topoisomerase type I activity; IEA:UniProtKB-EC.
DR   GO; GO:0006265; P:DNA topological change; IEA:InterPro.
DR   CDD; cd00186; TOP1Ac; 1.
DR   CDD; cd03362; TOPRIM_TopoIA_TopoIII; 1.
DR   Gene3D; 1.10.290.10; -; 1.
DR   Gene3D; 1.10.460.10; -; 1.
DR   Gene3D; 2.70.20.10; -; 1.
DR   InterPro; IPR000380; Topo_IA.
DR   InterPro; IPR003601; Topo_IA_2.
DR   InterPro; IPR023406; Topo_IA_AS.
DR   InterPro; IPR013497; Topo_IA_cen.
DR   InterPro; IPR013824; Topo_IA_cen_sub1.
DR   InterPro; IPR013825; Topo_IA_cen_sub2.
DR   InterPro; IPR013826; Topo_IA_cen_sub3.
DR   InterPro; IPR023405; Topo_IA_core_domain.
DR   InterPro; IPR003602; Topo_IA_DNA-bd_dom.
DR   InterPro; IPR013498; Topo_IA_Znf.
DR   InterPro; IPR005738; TopoIII.
DR   InterPro; IPR006171; TOPRIM_domain.
DR   InterPro; IPR034144; TOPRIM_TopoIII.
DR   PANTHER; PTHR11390; PTHR11390; 1.
DR   Pfam; PF01131; Topoisom_bac; 1.
DR   Pfam; PF01751; Toprim; 1.
DR   Pfam; PF01396; zf-C4_Topoisom; 2.
DR   PRINTS; PR00417; PRTPISMRASEI.
DR   SMART; SM00437; TOP1Ac; 1.
DR   SMART; SM00436; TOP1Bc; 1.
DR   SMART; SM00493; TOPRIM; 1.
DR   SUPFAM; SSF56712; SSF56712; 1.
DR   TIGRFAMs; TIGR01056; topB; 1.
DR   PROSITE; PS00396; TOPOISOMERASE_I_PROK; 1.
DR   PROSITE; PS50880; TOPRIM; 1.
PE   4: Predicted;
DR   PRODOM; D3VLS6.
DR   SWISS-2DPAGE; D3VLS6.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008075};
KW   Isomerase {ECO:0000313|EMBL:CBJ92878.1};
KW   Plasmid {ECO:0000313|EMBL:CBJ92878.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008075}.
FT   DOMAIN        1    133       Toprim. {ECO:0000259|PROSITE:PS50880}.
SQ   SEQUENCE   729 AA;  80864 MW;  5A8493C15D8A0D52 CRC64;
     MDLYICEKPS QAKDLAGVMK ASQRGDGFIH DGGNRVITWA FGHLLELYMP DDYDERYKSW
     SLETLPIAPD AWRYNVRKSA LKQYKIVEGL VKKASTIYIS TDFDREGEAI ARSLLDQFRY
     SGPIRRVCLT ALDESSIKKA LNNVKDGKET VSLYYAALAR QRADWLVGMN VSRLYTVLAR
     DVGFNHTLHV GRVITPTVAL VCQRDREIAG FTPSPYWTLG VNVSVQNGQF AAQWIPPEEC
     SDEQGRCINK AYAEQVSSQV NGANAVISKA ETKPGKESAP LPFDLTSLQQ YASKRWGYTA
     QQVLDAAQAL YETHKATTYP RTDSRYLPES QKEDIPDILQ ALILSDQNVS GLVAGADPHR
     KARVFNDSKV TAHHAIIPTP ARTDISAMSE IELNLYDAIR RFYIAQFYSE FEFTKTSIEV
     QCGRHLFAAS GKTPTKQGWK VLFASDSESS PKDEGEDTDA PVEQEKLPRV SQGEPALLNG
     TELMNKMTRP APHFTEATLL AAMENIARFV TEEKFKQILK DTAGLGTPAT RASIIQGTVD
     KGYFKRQKKV LLATDKAHAL IAVLPPAIKS PGMTAAWEQE LEKVATGSGN MSVFMKQIST
     WICQMVDQLK VAAPVLTKEG SAMAKAFEGA KPPSHECFNC GGEMHRIKGK NGFFWGCQNE
     ACKKTFPDNR GKPEKRIAAE DCPDCPDCGS PMRLRKGKAP GKKRASKFWG CTAYPDCKGT
     MPFKKSDLE
//

If you have problems or comments...

PBIL Back to PBIL home page