(data stored in SCRATCH zone)

SWISSPROT: F6HI03_VITVI

ID   F6HI03_VITVI            Unreviewed;       614 AA.
AC   F6HI03;
DT   27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT   27-JUL-2011, sequence version 1.
DT   08-MAY-2019, entry version 31.
DE   RecName: Full=60S ribosomal export protein NMD3 {ECO:0000256|RuleBase:RU364108};
GN   OrderedLocusNames=VIT_04s0043g00250 {ECO:0000313|EMBL:CCB51850.1};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|Proteomes:UP000009183};
RN   [1] {ECO:0000313|Proteomes:UP000009183}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX   PubMed=17721507; DOI=10.1038/nature06148;
RG   The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA   Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C.,
RA   Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A.,
RA   Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D.,
RA   Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M.,
RA   Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C.,
RA   Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I.,
RA   Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G.,
RA   Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D.,
RA   Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F.,
RA   Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F.,
RA   Weissenbach J., Quetier F., Wincker P.;
RT   "The grapevine genome sequence suggests ancestral hexaploidization in
RT   major angiosperm phyla.";
RL   Nature 449:463-467(2007).
CC   -!- FUNCTION: Acts as an adapter for the XPO1/CRM1-mediated export of
CC       the 60S ribosomal subunit. {ECO:0000256|RuleBase:RU364108}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|RuleBase:RU364108}.
CC       Nucleus {ECO:0000256|RuleBase:RU364108}.
CC   -!- SIMILARITY: Belongs to the NMD3 family.
CC       {ECO:0000256|RuleBase:RU364108}.
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DR   EMBL; FN595763; CCB51850.1; -; Genomic_DNA.
DR   STRING; 29760.VIT_04s0043g00250.t01; -.
DR   EnsemblPlants; VIT_04s0043g00250.t01; VIT_04s0043g00250.t01; VIT_04s0043g00250.
DR   Gramene; VIT_04s0043g00250.t01; VIT_04s0043g00250.t01; VIT_04s0043g00250.
DR   eggNOG; KOG2613; Eukaryota.
DR   eggNOG; COG1499; LUCA.
DR   InParanoid; F6HI03; -.
DR   Proteomes; UP000009183; Chromosome 4.
DR   ExpressionAtlas; F6HI03; baseline and differential.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0043023; F:ribosomal large subunit binding; IBA:GO_Central.
DR   GO; GO:0000055; P:ribosomal large subunit export from nucleus; IBA:GO_Central.
DR   InterPro; IPR039768; Nmd3.
DR   InterPro; IPR007064; Nmd3_N.
DR   PANTHER; PTHR12746; PTHR12746; 1.
DR   Pfam; PF04981; NMD3; 1.
PE   3: Inferred from homology;
DR   PRODOM; F6HI03.
DR   SWISS-2DPAGE; F6HI03.
KW   Complete proteome {ECO:0000313|Proteomes:UP000009183};
KW   Cytoplasm {ECO:0000256|RuleBase:RU364108};
KW   Nucleus {ECO:0000256|RuleBase:RU364108};
KW   Protein transport {ECO:0000256|RuleBase:RU364108};
KW   Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW   Transport {ECO:0000256|RuleBase:RU364108}.
FT   DOMAIN       79    308       NMD3. {ECO:0000259|Pfam:PF04981}.
SQ   SEQUENCE   614 AA;  71001 MW;  FC6749261DC0D5FB CRC64;
     MIINKLILRF ICWKREERPK HERRPLQPPG LVGIYFAFGL FLRIEYSSIL KSKFLRPGKA
     MAEEAGMFMV HQTVGSVLCC KCGIPMTPNA ANMCVKCLRS EIDITEGLQK HVTIVHCPEC
     DTYLQPPKTW IKAQLESKEL LTFCVKRLKN LNKVRLIHAE FIWTEPHSKR IKVKLRVQKE
     VLNGAILEQA YIVEFVQQEH MCESCSRVQA NPDQWVASVQ LRQHVPHRRT FFYLEQLILR
     HDAAGRAIKI KQMDQGIDFF FANRSHGVKF VEFIGKVTPS RSRHDKQLVS HDTKSNNYNY
     KYTFSVEICP ICREDLICLP PKVAVSLGNL GPLVICTKVS NNIALLDPFT LRHCFLDADQ
     YWRSSFKALL SSRQLVEYIV LDVEIVSSEV NVGGSKYALA DAQVARVSDF GKNDTIFNIR
     THLGHLLNPG DHALGYDVYA ANSNDMELEK YRGFVLPEAI LIKKSYEEKR QRKRGKPRSW
     KLKSLNMEVD DSKGRADQEK MNTEYEVFLR DLEEDPELRF NISLYRNKEY QPSEMASMTD
     GEDLPSVPLE ELLADLDLSE EEDGDNMWTC EGMCTRRWHW HMVQATSDLF QRWRHGSSMF
     RVEITFLFGV LPPV
//

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