(data stored in SCRATCH zone)

SWISSPROT: D1CDN3_THET1

ID   D1CDN3_THET1            Unreviewed;       991 AA.
AC   D1CDN3;
DT   19-JAN-2010, integrated into UniProtKB/TrEMBL.
DT   19-JAN-2010, sequence version 1.
DT   08-MAY-2019, entry version 54.
DE   SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACZ41039.1};
GN   OrderedLocusNames=Tter_0117 {ECO:0000313|EMBL:ACZ41039.1};
OS   Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).
OC   Bacteria; Thermobaculum.
OX   NCBI_TaxID=525904 {ECO:0000313|EMBL:ACZ41039.1, ECO:0000313|Proteomes:UP000000323};
RN   [1] {ECO:0000313|EMBL:ACZ41039.1, ECO:0000313|Proteomes:UP000000323}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-798 / YNP1 {ECO:0000313|Proteomes:UP000000323};
RX   PubMed=21304745;
RA   Kiss H., Cleland D., Lapidus A., Lucas S., Del Rio T.G., Nolan M.,
RA   Tice H., Han C., Goodwin L., Pitluck S., Liolios K., Ivanova N.,
RA   Mavromatis K., Ovchinnikova G., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Lu M., Brettin T.,
RA   Detter J.C., Goker M., Tindall B.J., Beck B., McDermott T.R.,
RA   Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P.,
RA   Kyrpides N.C., Klenk H.P., Cheng J.F.;
RT   "Complete genome sequence of 'Thermobaculum terrenum' type strain
RT   (YNP1).";
RL   Stand. Genomic Sci. 3:153-162(2010).
RN   [2] {ECO:0000313|Proteomes:UP000000323}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-798 / YNP1 {ECO:0000313|Proteomes:UP000000323};
RX   DOI=10.4056/sigs.1153107;
RA   Kiss H., Cleland D., Lapidus A., Lucas S., Glavina Del Rio T.,
RA   Nolan M., Tice H., Han C., Goodwin L., Pitluck S., Liolios K.,
RA   Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Chen A.,
RA   Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Lu M.,
RA   Brettin T., Detter J., Goker M., Tindall B., Beck B., McDermott T.,
RA   Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P.,
RA   Kyrpides N., Klenk H., Cheng J.;
RT   "Complete genome sequence of Thermobaculum terrenum type strain
RT   (YNP1T).";
RL   Stand. Genomic Sci. 3:153-162(2010).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP001825; ACZ41039.1; -; Genomic_DNA.
DR   STRING; 525904.Tter_0117; -.
DR   EnsemblBacteria; ACZ41039; ACZ41039; Tter_0117.
DR   KEGG; ttr:Tter_0117; -.
DR   Proteomes; UP000000323; Chromosome 1.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 2.130.10.10; -; 1.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
PE   3: Inferred from homology;
DR   PRODOM; D1CDN3.
DR   SWISS-2DPAGE; D1CDN3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000323};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000323};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    259    283       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN       28     90       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
SQ   SEQUENCE   991 AA;  111360 MW;  B50581977BD7D0FC CRC64;
     MSDDSHASLT VADFTLADHL GLEALQVLVN PILPQLYDFI ARRTIDGQEA EDVLQQTLWL
     AFKTCYKSDQ ELGLLDWLLS IATRVLLNRV NSDPLCECGL GFLVQDDSGR TNDKVSRLYG
     RLLASEISHF AKTQRFILGL FVHERWSIHR ISTVLGISPH KVESSISTTV LQILIDLWPE
     EPESRLNRND VYLITREILL GNISGSYPRI RSLIDTLSVK HTTFSMPPNL EARLWKSCSA
     DFPQQYVPPL AVGNDNIRVY LWAVAACIVL LFAAVLGANF FGIDSSAKPS QVKTAERLVS
     DQNVSNRSDD STSNIAARIN GFVRDRYLSG RLVLLHYGPD GNSVGVVDFD TGNIARDVFT
     DLSPNVVFAI SPSGRYLAYG KQDAVMLSDI IDRSPPRWLI TLQSPNTDRW RYEMDRTPHR
     FRVAALAWHP NEQILAVASE PIYYRGLEHS RVQLVRVRNS GGETISTIVT LQSFEDVVSL
     DWSADGTQLL IGTDRRILLA SFSRFGFWDL KQLPGRGTAT WSPDDKLVLW VSPSDSASGS
     SLFGVTNPST GKSSTLGTCD YARWEDDPNY VVFLQGVSNH SDRIVLSRMN LSSGEVDQVL
     QVAFKGNFES NALLSPDGRY LLYNDEDGLH LYDAKFQESV WRLDYPPKEV ISPLVWMSGW
     QSYDREFETL SGTIIYPKKS GSKVSLVSLD LRTGSTRQIA AASKLSYTVG DQALMVRTSK
     SNALLYTQEG IIKLYIPPKM QDITAVELTS SGSTIAYATR EGRGVAIWEI TPQRSRVNLA
     RSKPIAHLRT IPLSLDFSPS GRWILIKDRN NVWHLFNNKF KRIKILPRAD RYSWMVLDGK
     DVLVQLKNLN ISIYTPRGKT VYEINGYVNA YAPLDDGYIA VWTMDDDLRV YDLRKKDFVT
     WGSMLGMDYS ELDDSSLVQI VPISDGGSWI ALRLRDSVYM LDLSNGYQYP LQIKATSAGE
     LTWLSGDPNP QFRRYVDWDS CHEVPPDKCP A
//

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