(data stored in SCRATCH zone)

SWISSPROT: D1YVF2_METPS

ID   D1YVF2_METPS            Unreviewed;       195 AA.
AC   D1YVF2;
DT   09-FEB-2010, integrated into UniProtKB/TrEMBL.
DT   09-FEB-2010, sequence version 1.
DT   11-DEC-2019, entry version 44.
DE   SubName: Full=DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:BAI60424.1};
GN   Name=rpoE1 {ECO:0000313|EMBL:BAI60424.1};
GN   OrderedLocusNames=MCP_0352 {ECO:0000313|EMBL:BAI60424.1};
OS   Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /
OS   SANAE).
OC   Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia;
OC   Methanocellales; Methanocellaceae; Methanocella.
OX   NCBI_TaxID=304371 {ECO:0000313|EMBL:BAI60424.1, ECO:0000313|Proteomes:UP000001882};
RN   [1] {ECO:0000313|Proteomes:UP000001882}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17711 / JCM 13418 / NBRC 101707 / SANAE
RC   {ECO:0000313|Proteomes:UP000001882};
RX   PubMed=21829548; DOI=10.1371/journal.pone.0022898;
RA   Sakai S., Takaki Y., Shimamura S., Sekine M., Tajima T., Kosugi H.,
RA   Ichikawa N., Tasumi E., Hiraki A.T., Shimizu A., Kato Y., Nishiko R.,
RA   Mori K., Fujita N., Imachi H., Takai K.;
RT   "Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella
RT   paludicola, the first cultivated representative of the order
RT   Methanocellales.";
RL   PLoS ONE 6:E22898-E22898(2011).
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DR   EMBL; AP011532; BAI60424.1; -; Genomic_DNA.
DR   STRING; 304371.MCP_0352; -.
DR   EnsemblBacteria; BAI60424; BAI60424; MCP_0352.
DR   KEGG; mpd:MCP_0352; -.
DR   PATRIC; fig|304371.9.peg.361; -.
DR   eggNOG; arCOG00675; Archaea.
DR   eggNOG; COG1095; LUCA.
DR   HOGENOM; HOG000229315; -.
DR   KO; K03049; -.
DR   OMA; MRQPGLG; -.
DR   Proteomes; UP000001882; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 3.30.1490.120; -; 1.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR036898; RNA_pol_Rpb7-like_N_sf.
DR   InterPro; IPR004519; RNAP_E/RPC8.
DR   InterPro; IPR005576; Rpb7-like_N.
DR   InterPro; IPR022967; S1_dom.
DR   InterPro; IPR003029; S1_domain.
DR   Pfam; PF00575; S1; 1.
DR   Pfam; PF03876; SHS2_Rpb7-N; 1.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   SUPFAM; SSF88798; SSF88798; 1.
DR   TIGRFAMs; TIGR00448; rpoE; 1.
DR   PROSITE; PS50126; S1; 1.
PE   4: Predicted;
DR   PRODOM; D1YVF2.
DR   SWISS-2DPAGE; D1YVF2.
KW   DNA-directed RNA polymerase {ECO:0000313|EMBL:BAI60424.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001882};
KW   Transcription {ECO:0000313|EMBL:BAI60424.1}.
FT   DOMAIN          82..166
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
SQ   SEQUENCE   195 AA;  21879 MW;  74FFB802367B0AAE CRC64;
     MYRKVRLVDI IRIPPQRLEE DLEQVITETI RDKLEGRIDK ALGSIVAVLD IVDIGEGHIL
     VGDGAVYYEV TFDAISYRPE LQEIVEGQVV EIVAFGAFVS VGPIDCLVHV SQVADEFMSY
     DEKNSRLVSK ESSKSLGEGD SVRARIVAVS LNEHDARESK IGLTMRQVAL GKLEWIEEEQ
     RRKEKGERPE KARAS
//

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