(data stored in SCRATCH zone)

SWISSPROT: D3F3Y2_CONWI

ID   D3F3Y2_CONWI            Unreviewed;       270 AA.
AC   D3F3Y2;
DT   23-MAR-2010, integrated into UniProtKB/TrEMBL.
DT   23-MAR-2010, sequence version 1.
DT   30-AUG-2017, entry version 51.
DE   SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG {ECO:0000313|EMBL:ADB48465.1};
GN   OrderedLocusNames=Cwoe_0029 {ECO:0000313|EMBL:ADB48465.1};
OS   Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /
OS   ID131577).
OC   Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales;
OC   Conexibacteraceae; Conexibacter.
OX   NCBI_TaxID=469383 {ECO:0000313|EMBL:ADB48465.1, ECO:0000313|Proteomes:UP000008229};
RN   [1] {ECO:0000313|Proteomes:UP000008229}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 14684 / JCM 11494 / NBRC 100937 / ID131577
RC   {ECO:0000313|Proteomes:UP000008229};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E.,
RA   Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K.,
RA   Ivanova N., Mikhailova N., Chertkov O., Brettin T., Detter J.C.,
RA   Han C., Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F.,
RA   Hugenholtz P., Woyke T., Wu D., Pukall R., Steenblock K.,
RA   Schneider S., Klenk H.-P., Eisen J.A.;
RT   "The complete genome of Conexibacter woesei DSM 14684.";
RL   Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001854; ADB48465.1; -; Genomic_DNA.
DR   RefSeq; WP_012931518.1; NC_013739.1.
DR   STRING; 469383.Cwoe_0029; -.
DR   EnsemblBacteria; ADB48465; ADB48465; Cwoe_0029.
DR   KEGG; cwo:Cwoe_0029; -.
DR   eggNOG; ENOG4105DN4; Bacteria.
DR   eggNOG; COG1191; LUCA.
DR   HOGENOM; HOG000270271; -.
DR   KO; K02405; -.
DR   OMA; IRTHMPL; -.
DR   OrthoDB; POG091H02NW; -.
DR   BioCyc; CWOE469383:GH82-29-MONOMER; -.
DR   Proteomes; UP000008229; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR012845; RNA_pol_sigma_FliA_WhiG.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   SUPFAM; SSF88659; SSF88659; 2.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02479; FliA_WhiG; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; D3F3Y2.
DR   SWISS-2DPAGE; D3F3Y2.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008229};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008229};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN      229    255       RNA_pol_sigma70. {ECO:0000259|PROSITE:
FT                                PS00716}.
SQ   SEQUENCE   270 AA;  31314 MW;  6760FA0AB72B67E2 CRC64;
     MKLDTRRHNR ISAEDALALW RQYKESGDRA VRDRLVLTFA PMVKYIVYKK VREIPARCEV
     EDFISCGLEA LIHSIERYDP EKGATLEQFS WTRIHGAVLD ELRRQDWAPR SLRRWERDIN
     QAREHFIGVH SRRPSREELA GALGTTPAEL RAREDEIVAS DVTSLNTLVL SDDETAIERI
     DTLVSEDRFA DPEHHTARDQ AKMRFREAFE RLPRREREVA VLLYVKNLTL REIGGILGVS
     ESRVCQIHGQ LKRMLKEELI ADSVLFSEVA
//

If you have problems or comments...

PBIL Back to PBIL home page