(data stored in SCRATCH zone)

SWISSPROT: D3UWB8_XENBS

ID   D3UWB8_XENBS            Unreviewed;       466 AA.
AC   D3UWB8;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   16-JAN-2019, entry version 49.
DE   RecName: Full=RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113};
DE            EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};
GN   Name=rtcB {ECO:0000256|RuleBase:RU371113};
GN   OrderedLocusNames=XBJ1_0478 {ECO:0000313|EMBL:CBJ79627.1};
OS   Xenorhabdus bovienii (strain SS-2004).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406818 {ECO:0000313|EMBL:CBJ79627.1, ECO:0000313|Proteomes:UP000002045};
RN   [1] {ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|Proteomes:UP000002045};
RA   Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S.,
RA   Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P.,
RA   Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S.,
RA   Suen G.;
RT   "Complete genome sequence of Xenorhabdus nematophila (strain ATCC
RT   19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6).";
RL   Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CBJ79627.1, ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|EMBL:CBJ79627.1,
RC   ECO:0000313|Proteomes:UP000002045};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
CC   -!- COFACTOR:
CC       Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
CC         Evidence={ECO:0000256|RuleBase:RU371113};
CC       Note=Binds 2 manganese ions per subunit.
CC       {ECO:0000256|RuleBase:RU371113};
CC   -!- SUBUNIT: Monomer. {ECO:0000256|RuleBase:RU371113}.
CC   -!- SIMILARITY: Belongs to the RtcB family.
CC       {ECO:0000256|RuleBase:RU371113}.
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DR   EMBL; FN667741; CBJ79627.1; -; Genomic_DNA.
DR   RefSeq; WP_012987083.1; NC_013892.1.
DR   STRING; 406818.XBJ1_0478; -.
DR   EnsemblBacteria; CBJ79627; CBJ79627; XBJ1_0478.
DR   GeneID; 8830101; -.
DR   KEGG; xbo:XBJ1_0478; -.
DR   PATRIC; fig|406818.4.peg.438; -.
DR   eggNOG; ENOG4105E0Y; Bacteria.
DR   eggNOG; COG1690; LUCA.
DR   HOGENOM; HOG000220065; -.
DR   KO; K14415; -.
DR   OMA; PGSMGDY; -.
DR   BioCyc; XBOV406818:XBJ1_RS02060-MONOMER; -.
DR   Proteomes; UP000002045; Chromosome.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0008452; F:RNA ligase activity; IEA:InterPro.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   Gene3D; 3.90.1860.10; -; 1.
DR   InterPro; IPR001233; RtcB.
DR   InterPro; IPR036025; RtcB-like_sf.
DR   PANTHER; PTHR11118; PTHR11118; 1.
DR   Pfam; PF01139; RtcB; 1.
DR   SUPFAM; SSF103365; SSF103365; 1.
PE   3: Inferred from homology;
DR   PRODOM; D3UWB8.
DR   SWISS-2DPAGE; D3UWB8.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002045};
KW   Ligase {ECO:0000256|RuleBase:RU371113};
KW   Manganese {ECO:0000256|RuleBase:RU371113};
KW   Metal-binding {ECO:0000256|RuleBase:RU371113};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002045};
KW   Transferase {ECO:0000313|EMBL:CBJ79627.1}.
SQ   SEQUENCE   466 AA;  52048 MW;  E36CA09A5CC179D1 CRC64;
     MSTFTRLQKR LSRQGIETQY ENNIYRFNKE QIEAEVLLPE SLPLEEKAVQ QLLDLASVHV
     PGSDAKVCRT RATPDFHPGA VAPVGCIVAT TEDLVIPAAI GTDINCGMRL LTTGLSYAEA
     NSQKEALIQQ LKNTLLMDQR DVPVTPTSFS ALFDEGLAAW LQELPQQGVW QQADFKRMHT
     ELNAILSTQA VQAHSRYAPE AFFEHREIIR PASLGTVGSG NHFVELQIVD TILDRHAAYA
     AGLHEGEVLM MIHTGSRDVG FYIGQRWVDK ARALWPVTAK YPSSGLFGLT DEHAQEYFLA
     MGCAARYAWA NRIVLTELVR AAWKQIFGQD KSKLIVDLSH NIIFPEQGMN LHRKGATPAR
     AGELALIPGS MGDYSYLVLG KGNEDWLWSC SHGAGRSIRR QAMRNKVPDL QKNSRLPWQC
     ITLKSDRLRE EAPEAYKPIT PVIEIQEQAG LIQPVARVRP WITFKA
//

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