(data stored in SCRATCH zone)

SWISSPROT: D3UZ56_XENBS

ID   D3UZ56_XENBS            Unreviewed;       327 AA.
AC   D3UZ56;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   16-JAN-2019, entry version 43.
DE   SubName: Full=Transposase {ECO:0000313|EMBL:CBJ79584.1};
GN   OrderedLocusNames=XBJ1_0434 {ECO:0000313|EMBL:CBJ79584.1};
OS   Xenorhabdus bovienii (strain SS-2004).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Morganellaceae; Xenorhabdus.
OX   NCBI_TaxID=406818 {ECO:0000313|EMBL:CBJ79584.1, ECO:0000313|Proteomes:UP000002045};
RN   [1] {ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|Proteomes:UP000002045};
RA   Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S.,
RA   Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P.,
RA   Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S.,
RA   Suen G.;
RT   "Complete genome sequence of Xenorhabdus nematophila (strain ATCC
RT   19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6).";
RL   Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CBJ79584.1, ECO:0000313|Proteomes:UP000002045}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SS-2004 {ECO:0000313|EMBL:CBJ79584.1,
RC   ECO:0000313|Proteomes:UP000002045};
RX   PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA   Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA   Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C.,
RA   de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E.,
RA   Jewell K.A., Knack J.J., Krasomil-Osterfeld K.C., Kukor R., Lanois A.,
RA   Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X.,
RA   Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M.,
RA   Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D.,
RA   Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z.,
RA   Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R.,
RA   Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S.,
RA   Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.;
RT   "The entomopathogenic bacterial endosymbionts xenorhabdus and
RT   photorhabdus: convergent lifestyles from divergent genomes.";
RL   PLoS ONE 6:e27909-e27909(2011).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; FN667741; CBJ79584.1; -; Genomic_DNA.
DR   RefSeq; WP_012987041.1; NC_013892.1.
DR   STRING; 406818.XBJ1_0434; -.
DR   EnsemblBacteria; CBJ79584; CBJ79584; XBJ1_0434.
DR   GeneID; 8830058; -.
DR   KEGG; xbo:XBJ1_0434; -.
DR   PATRIC; fig|406818.4.peg.402; -.
DR   eggNOG; ENOG4105F9F; Bacteria.
DR   eggNOG; COG2826; LUCA.
DR   HOGENOM; HOG000114768; -.
DR   KO; K07482; -.
DR   OMA; DCFARFI; -.
DR   BioCyc; XBOV406818:XBJ1_RS01915-MONOMER; -.
DR   Proteomes; UP000002045; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   Gene3D; 3.30.420.10; -; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR025246; IS30-like_HTH.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   Pfam; PF13936; HTH_38; 1.
DR   Pfam; PF00665; rve; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
DR   PRODOM; D3UZ56.
DR   SWISS-2DPAGE; D3UZ56.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002045};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002045}.
FT   DOMAIN      155    316       Integrase catalytic.
FT                                {ECO:0000259|PROSITE:PS50994}.
SQ   SEQUENCE   327 AA;  38435 MW;  9D4085489C950085 CRC64;
     MAYKQLTETE RYQIFSLKEA GFSQREISKS LNRNPSTISR ELRRNREAKK YTPEQAQLKA
     VARRQCATKA VKMKPEIEMW IKQLIWQDLS PEQTVGYLKR ENIISLHHET VYRLIYKDKI
     NGGNLWQHLR IAKKPYRKRY GSYERRGKIK NRVSIDKRPK LVDKKQRIGD WEGDTIVGKN
     HKSALLTLVE RKSLFTIIIK LENKTAEGVA KAATRHLSLI KHKIKTMTFD NGLEFAEHEL
     ISKNLETKIY FAHPYSPWER GINENTNGLI RDYFPKGTDF NKVSEREINL VANRLNNRPR
     KTRDYKTPNE LFKGISSHLL RPLRCCA
//

If you have problems or comments...

PBIL Back to PBIL home page