(data stored in SCRATCH zone)

SWISSPROT: D4YX15_SPHJU

ID   D4YX15_SPHJU            Unreviewed;       363 AA.
AC   D4YX15;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 45.
DE   RecName: Full=Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093};
DE            Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};
GN   Name=prfA {ECO:0000256|HAMAP-Rule:MF_00093,
GN   ECO:0000313|EMBL:BAI94897.1};
GN   OrderedLocusNames=SJA_C1-00630 {ECO:0000313|EMBL:BAI94897.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI94897.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI94897.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Peptide chain release factor 1 directs the termination
CC       of translation in response to the peptide chain termination codons
CC       UAG and UAA. {ECO:0000256|HAMAP-Rule:MF_00093}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00093}.
CC   -!- PTM: Methylated by PrmC. Methylation increases the termination
CC       efficiency of RF1. {ECO:0000256|HAMAP-Rule:MF_00093}.
CC   -!- SIMILARITY: Belongs to the prokaryotic/mitochondrial release
CC       factor family. {ECO:0000256|HAMAP-Rule:MF_00093}.
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DR   EMBL; AP010803; BAI94897.1; -; Genomic_DNA.
DR   RefSeq; WP_013038735.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-00630; -.
DR   EnsemblBacteria; BAI94897; BAI94897; SJA_C1-00630.
DR   GeneID; 29271771; -.
DR   KEGG; sjp:SJA_C1-00630; -.
DR   eggNOG; ENOG4105C8K; Bacteria.
DR   eggNOG; COG0216; LUCA.
DR   HOGENOM; HOG000074815; -.
DR   KO; K02835; -.
DR   OMA; WKVEIVS; -.
DR   OrthoDB; POG091H021P; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0016149; F:translation release factor activity, codon specific; IEA:UniProtKB-HAMAP.
DR   HAMAP; MF_00093; Rel_fac_1; 1.
DR   InterPro; IPR005139; PCRF.
DR   InterPro; IPR000352; Pep_chain_release_fac_I_II.
DR   InterPro; IPR004373; PrfA.
DR   Pfam; PF03462; PCRF; 1.
DR   Pfam; PF00472; RF-1; 1.
DR   SMART; SM00937; PCRF; 1.
DR   TIGRFAMs; TIGR00019; prfA; 1.
DR   PROSITE; PS00745; RF_PROK_I; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YX15.
DR   SWISS-2DPAGE; D4YX15.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00093};
KW   Methylation {ECO:0000256|HAMAP-Rule:MF_00093};
KW   Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00093};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753}.
FT   DOMAIN      230    246       RF_PROK_I. {ECO:0000259|PROSITE:PS00745}.
FT   MOD_RES     237    237       N5-methylglutamine. {ECO:0000256|HAMAP-
FT                                Rule:MF_00093}.
SQ   SEQUENCE   363 AA;  39829 MW;  63940158C6FF5C32 CRC64;
     MHISAERIAQ IEARRDEVQA SMTRADLAPE EFVRLSKEYA EIEPVAKAAH EVRRLRQELS
     ALEYMAGGED ADSDPLMREM AQEEMQLIKS RLPDAERALA LQLLPKDAAD ARPAMLEIRA
     GTGGDEAALF AGDLFRMYQR YADAQGWKME LISANASEVG GYKEVVASVT GTGVFAKLKF
     ESGVHRVQRV PVTESGGRIH TSAATVAVLP EPEEVDVQIA DSDLKIDIYR ASGAGGQHVN
     TTDSAVRITH LPSGIVVTQQ DERSQHKNKA KAMQVLRARI YEAERERAQS EQAGARKAMV
     GSGDRSERIR TYNFPQGRVT DHRINLTLHR LPEILEGPGL SEVIDALVAE DEAARLAQLD
     GVA
//

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