(data stored in SCRATCH zone)

SWISSPROT: D4YXF0_SPHJU

ID   D4YXF0_SPHJU            Unreviewed;       504 AA.
AC   D4YXF0;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   13-FEB-2019, entry version 52.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   Name=rpoN {ECO:0000313|EMBL:BAI95032.1};
GN   OrderedLocusNames=SJA_C1-01980 {ECO:0000313|EMBL:BAI95032.1};
OS   Sphingobium japonicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26
OS   / NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95032.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95032.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S
RC   {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|PIRNR:PIRNR000774}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; AP010803; BAI95032.1; -; Genomic_DNA.
DR   RefSeq; WP_013038837.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-01980; -.
DR   EnsemblBacteria; BAI95032; BAI95032; SJA_C1-01980.
DR   GeneID; 29271903; -.
DR   KEGG; sjp:SJA_C1-01980; -.
DR   eggNOG; ENOG4105DTW; Bacteria.
DR   eggNOG; COG1508; LUCA.
DR   HOGENOM; HOG000071904; -.
DR   KO; K03092; -.
DR   OMA; VTTQKFM; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.1330; -; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; PTHR32248; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YXF0.
DR   SWISS-2DPAGE; D4YXF0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   DNA-binding {ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000774};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Sigma factor {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN      136    321       Sigma54_CBD. {ECO:0000259|Pfam:PF04963}.
FT   DOMAIN      336    495       Sigma54_DBD. {ECO:0000259|Pfam:PF04552}.
SQ   SEQUENCE   504 AA;  54192 MW;  0B467B10FB26F845 CRC64;
     MTLAPRLDLR QSQSLVMTPQ LQQAIKLLAL SNLEIEAFVA GELEKNPLLE AGGTDDFAPP
     ADGVDRAAEQ HDLRAETGDA DQLIGQGLGA ADSPLDVDYG AETFIDDGPG DRMAGAIGSG
     GGMDMLSGGS GEAPDFDSFA NPEQGLQEHL MDQARSALSG MDLMIAAQLI GQIDEAGYLE
     ANLLETAHGM GVPLYRIEQV LGVIHGFDPT GVGARSLSEC LALQAKEADR YDPCMAKLLA
     NLDLLARGAL PQLRRICGVD EEDMADMIRE LRGYDPKPGL RFSSESAAPV TPDLFVRPTR
     EGWAIEVNSA TLPRVLINRT YYVELASGPQ DRTSKAWLAD CLASANWLVK ALDQRQKTIV
     KVASEIVRQQ EDFFRKGVEH LKPLTLKAVA DAIQMHESTV SRVTSNKYLS CPRGLYELKY
     FFTSGVAAAG GEGAVSAEAV KSHIKALIAA ETADAILSDD TLVDLLRAKG MDIARRTVAK
     YREAMGIGSS VQRRRQKALR GQAA
//

If you have problems or comments...

PBIL Back to PBIL home page