(data stored in SCRATCH zone)

SWISSPROT: D4YXV5_SPHJU

ID   D4YXV5_SPHJU            Unreviewed;        85 AA.
AC   D4YXV5;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 34.
DE   SubName: Full=ECF-type sigma factor {ECO:0000313|EMBL:BAI95187.1};
GN   OrderedLocusNames=SJA_C1-03530 {ECO:0000313|EMBL:BAI95187.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95187.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95187.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
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DR   EMBL; AP010803; BAI95187.1; -; Genomic_DNA.
DR   STRING; 452662.SJA_C1-03530; -.
DR   EnsemblBacteria; BAI95187; BAI95187; SJA_C1-03530.
DR   KEGG; sjp:SJA_C1-03530; -.
DR   HOGENOM; HOG000161318; -.
DR   KO; K03088; -.
DR   OrthoDB; POG091H04ZH; -.
DR   BioCyc; SJAP452662:GHEL-364-MONOMER; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
PE   4: Predicted;
DR   PRODOM; D4YXV5.
DR   SWISS-2DPAGE; D4YXV5.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753}.
FT   DOMAIN       11     62       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   85 AA;  10109 MW;  D53A7D42B685BA1F CRC64;
     MTDTPDLERL ERLEAALLTM PRLRREIFLA VRLDAMRYED VARITGLSVR AVERQMARAI
     AHIGYHLRHG AAQPPRRWWY RRRGK
//

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