(data stored in SCRATCH zone)

SWISSPROT: D4YY91_SPHJU

ID   D4YY91_SPHJU            Unreviewed;       188 AA.
AC   D4YY91;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   08-MAY-2019, entry version 57.
DE   SubName: Full=ECF-type sigma factor {ECO:0000313|EMBL:BAI95323.1};
GN   Name=rpoE {ECO:0000313|EMBL:BAI95323.1};
GN   OrderedLocusNames=SJA_C1-04890 {ECO:0000313|EMBL:BAI95323.1};
OS   Sphingobium japonicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26
OS   / NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95323.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95323.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S
RC   {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS01160068}.
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DR   EMBL; AP010803; BAI95323.1; -; Genomic_DNA.
DR   RefSeq; WP_013039088.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-04890; -.
DR   EnsemblBacteria; BAI95323; BAI95323; SJA_C1-04890.
DR   GeneID; 29272170; -.
DR   KEGG; sjp:SJA_C1-04890; -.
DR   eggNOG; ENOG4105EMN; Bacteria.
DR   eggNOG; COG1595; LUCA.
DR   HOGENOM; HOG000094755; -.
DR   KO; K03088; -.
DR   OMA; GEIDNTH; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   PANTHER; PTHR43133; PTHR43133; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YY91.
DR   SWISS-2DPAGE; D4YY91.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       28     94       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      131    181       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   188 AA;  20815 MW;  466F29EE2E10D5E5 CRC64;
     MTASLPDCSD GELAALALGG RQAAYGELVR RHQGWVHRLV RSHVGSMDEA LDVTQASFVA
     AFAALNRYDV TRPFQVWMSR IVINKCHDWR RRRAVRNFFS MALPLGEADD VADEAPLPDQ
     AIGAEQQLAE AMKAIAALPA SLKDTLILRT IDEKSEAETA EILGISQKAV ETRLYRARAR
     LAEMLKKV
//

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