(data stored in SCRATCH zone)

SWISSPROT: D4YYH4_SPHJU

ID   D4YYH4_SPHJU            Unreviewed;       394 AA.
AC   D4YYH4;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 42.
DE   SubName: Full=Putative integrase {ECO:0000313|EMBL:BAI95406.1};
GN   OrderedLocusNames=SJA_C1-05720 {ECO:0000313|EMBL:BAI95406.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95406.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95406.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- SIMILARITY: Belongs to the 'phage' integrase family.
CC       {ECO:0000256|SAAS:SAAS00555423}.
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DR   EMBL; AP010803; BAI95406.1; -; Genomic_DNA.
DR   ProteinModelPortal; D4YYH4; -.
DR   STRING; 452662.SJA_C1-05720; -.
DR   EnsemblBacteria; BAI95406; BAI95406; SJA_C1-05720.
DR   KEGG; sjp:SJA_C1-05720; -.
DR   eggNOG; ENOG4105DFP; Bacteria.
DR   eggNOG; COG0582; LUCA.
DR   HOGENOM; HOG000263106; -.
DR   OMA; DIFPYVG; -.
DR   OrthoDB; POG091H0GH7; -.
DR   BioCyc; SJAP452662:GHEL-583-MONOMER; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   Gene3D; 1.10.150.130; -; 1.
DR   Gene3D; 1.10.443.10; -; 1.
DR   InterPro; IPR011010; DNA_brk_join_enz.
DR   InterPro; IPR013762; Integrase-like_cat.
DR   InterPro; IPR002104; Integrase_catalytic.
DR   InterPro; IPR025166; Integrase_DNA_bind_dom.
DR   InterPro; IPR023109; Integrase_recombinase_N.
DR   InterPro; IPR004107; Integrase_SAM-like_N.
DR   Pfam; PF13356; Arm-DNA-bind_3; 1.
DR   Pfam; PF14659; Phage_int_SAM_3; 1.
DR   Pfam; PF00589; Phage_integrase; 1.
DR   SUPFAM; SSF56349; SSF56349; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYH4.
DR   SWISS-2DPAGE; D4YYH4.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753}.
FT   DOMAIN        1     64       Arm-DNA-bind_3. {ECO:0000259|Pfam:
FT                                PF13356}.
FT   DOMAIN       75    122       Integrase_SAM-like_N. {ECO:0000259|Pfam:
FT                                PF14659}.
FT   DOMAIN      180    351       Phage_integrase. {ECO:0000259|Pfam:
FT                                PF00589}.
SQ   SEQUENCE   394 AA;  45058 MW;  4F64F5284D3A7D2B CRC64;
     MYVVVQPSGA IVFRYDYRLN GRRETLTLGR YGPDGLSLAR AREKLIDAKR TISEGRSPAQ
     EKQHDKRRLK EAKRFGEFGE KWFQESRMAD STRAMRRSIY ERDILPIFRN RLLTEITPDD
     LRMMCGKVKD RGAPATAVHV RDIVKLIFAF AVLHGEKVAN PADEVGPASI ATFVPKDRSL
     SPAEIRVMLG QLEHVPTLPT IRLGMKLFLL TMVRKSELQD ATWDEVDFEN AVWSIPKERM
     KRSKAHNVYL SQQAVDIFIA LKTCAGNSRY VLPSRYDADA PMSRATFNRI TTAVVVRAKK
     EGLPLEPFTV HDLRRTGSTL LNELGFNSDW IEKCLAHEDG RSSRGVYNKA EYEHQRRHMM
     QEWSNLVDAW VVGRKYVPTL LPATMELLEL EPSV
//

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