(data stored in SCRATCH zone)

SWISSPROT: D4YYN0_SPHJU

ID   D4YYN0_SPHJU            Unreviewed;       207 AA.
AC   D4YYN0;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 40.
DE   RecName: Full=50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328};
GN   Name=rplD {ECO:0000256|HAMAP-Rule:MF_01328,
GN   ECO:0000313|EMBL:BAI95462.1};
GN   OrderedLocusNames=SJA_C1-06280 {ECO:0000313|EMBL:BAI95462.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95462.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95462.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Forms part of the polypeptide exit tunnel.
CC       {ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- FUNCTION: One of the primary rRNA binding proteins, this protein
CC       initially binds near the 5'-end of the 23S rRNA. It is important
CC       during the early stages of 50S assembly. It makes multiple
CC       contacts with different domains of the 23S rRNA in the assembled
CC       50S subunit and ribosome. {ECO:0000256|HAMAP-Rule:MF_01328}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-
CC       Rule:MF_01328}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL4 family.
CC       {ECO:0000256|HAMAP-Rule:MF_01328}.
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DR   EMBL; AP010803; BAI95462.1; -; Genomic_DNA.
DR   RefSeq; WP_007686583.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-06280; -.
DR   EnsemblBacteria; BAI95462; BAI95462; SJA_C1-06280.
DR   GeneID; 29272301; -.
DR   KEGG; sjp:SJA_C1-06280; -.
DR   eggNOG; ENOG4106U5A; Bacteria.
DR   eggNOG; COG0088; LUCA.
DR   HOGENOM; HOG000248767; -.
DR   KO; K02926; -.
DR   OMA; DYSFKLN; -.
DR   OrthoDB; POG091H027V; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.40.1370.10; -; 2.
DR   HAMAP; MF_01328_B; Ribosomal_L4_B; 1.
DR   InterPro; IPR002136; Ribosomal_L4/L1e.
DR   InterPro; IPR023574; Ribosomal_L4_dom.
DR   InterPro; IPR013005; Ribosomal_uL4/L1e.
DR   PANTHER; PTHR10746; PTHR10746; 1.
DR   Pfam; PF00573; Ribosomal_L4; 1.
DR   SUPFAM; SSF52166; SSF52166; 1.
DR   TIGRFAMs; TIGR03953; rplD_bact; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYN0.
DR   SWISS-2DPAGE; D4YYN0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01328};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01328,
KW   ECO:0000313|EMBL:BAI95462.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01328};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01328}.
SQ   SEQUENCE   207 AA;  22051 MW;  1937802FE82E602B CRC64;
     MKVKVQTLDA AAAGEVELND AVFGVEPRTD ILHRVVTWQL EKRRAPARAT RERSDVARTG
     KKFGRQKGGG TARHGDRKAP VFIGGGKAHG ARARTFGHDL NKKVRALGLK MALSSKAKDG
     SLIVLDNLDV AEGKTKALVA HLAKLNLNKA LFIDGDAVNV SFAKASANII GVDLLPAVGA
     NVYDILKADS LVLTRAAVEK LEARFNG
//

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