(data stored in SCRATCH zone)

SWISSPROT: D4YYP1_SPHJU

ID   D4YYP1_SPHJU            Unreviewed;       190 AA.
AC   D4YYP1;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   07-JUN-2017, entry version 41.
DE   RecName: Full=50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333};
GN   Name=rplE {ECO:0000256|HAMAP-Rule:MF_01333,
GN   ECO:0000313|EMBL:BAI95473.1};
GN   OrderedLocusNames=SJA_C1-06390 {ECO:0000313|EMBL:BAI95473.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95473.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95473.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: This is 1 of the proteins that binds and probably
CC       mediates the attachment of the 5S RNA into the large ribosomal
CC       subunit, where it forms part of the central protuberance. In the
CC       70S ribosome it contacts protein S13 of the 30S subunit (bridge
CC       B1b), connecting the 2 subunits; this bridge is implicated in
CC       subunit movement. Contacts the P site tRNA; the 5S rRNA and some
CC       of its associated proteins might help stabilize positioning of
CC       ribosome-bound tRNAs. {ECO:0000256|HAMAP-Rule:MF_01333}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S
CC       rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site
CC       tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.
CC       {ECO:0000256|HAMAP-Rule:MF_01333}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL5 family.
CC       {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003930}.
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DR   EMBL; AP010803; BAI95473.1; -; Genomic_DNA.
DR   RefSeq; WP_007686565.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-06390; -.
DR   EnsemblBacteria; BAI95473; BAI95473; SJA_C1-06390.
DR   GeneID; 29272312; -.
DR   KEGG; sjp:SJA_C1-06390; -.
DR   eggNOG; ENOG4105CW6; Bacteria.
DR   eggNOG; COG0094; LUCA.
DR   HOGENOM; HOG000231311; -.
DR   KO; K02931; -.
DR   OMA; EQVMFHE; -.
DR   OrthoDB; POG091H007J; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.30.1440.10; -; 1.
DR   HAMAP; MF_01333_B; Ribosomal_L5_B; 1.
DR   InterPro; IPR002132; Ribosomal_L5.
DR   InterPro; IPR020930; Ribosomal_L5_bac-type.
DR   InterPro; IPR031309; Ribosomal_L5_C.
DR   InterPro; IPR020929; Ribosomal_L5_CS.
DR   InterPro; IPR022803; Ribosomal_L5_domain.
DR   InterPro; IPR031310; Ribosomal_L5_N.
DR   Pfam; PF00281; Ribosomal_L5; 1.
DR   Pfam; PF00673; Ribosomal_L5_C; 1.
DR   PIRSF; PIRSF002161; Ribosomal_L5; 1.
DR   SUPFAM; SSF55282; SSF55282; 1.
DR   PROSITE; PS00358; RIBOSOMAL_L5; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYP1.
DR   SWISS-2DPAGE; D4YYP1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01333,
KW   ECO:0000256|RuleBase:RU003930};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01333,
KW   ECO:0000256|RuleBase:RU003930, ECO:0000313|EMBL:BAI95473.1};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01333};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01333};
KW   tRNA-binding {ECO:0000256|HAMAP-Rule:MF_01333}.
FT   DOMAIN       29     85       Ribosomal_L5. {ECO:0000259|Pfam:PF00281}.
FT   DOMAIN       89    182       Ribosomal_L5_C. {ECO:0000259|Pfam:
FT                                PF00673}.
SQ   SEQUENCE   190 AA;  21683 MW;  91693DE2CC9910EB CRC64;
     MSDKYIPRSK SLYDAEIAKA MTAKFGYKNV MEVPKIEKIT LNMGVGEATQ DKKKVTSAAE
     EMELIAGQKP VITKARKSIA QFKLREGMPI GAKVTLRRER MYEFLDRLIN IALPRVRDFR
     GLNPKSFDGR GNYAFGIKEQ IIFPEINYDR IDKVRGMDII VTTTAKTDEE ARELLRLFGF
     PFPIEEKQAA
//

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