(data stored in SCRATCH zone)

SWISSPROT: D4YYP6_SPHJU

ID   D4YYP6_SPHJU            Unreviewed;       235 AA.
AC   D4YYP6;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   05-JUL-2017, entry version 49.
DE   RecName: Full=30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00382345};
GN   Name=rpsE {ECO:0000256|HAMAP-Rule:MF_01307,
GN   ECO:0000313|EMBL:BAI95478.1};
GN   OrderedLocusNames=SJA_C1-06440 {ECO:0000313|EMBL:BAI95478.1};
OS   Sphingobium japonicum (strain NBRC 101211 / UT26S).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=452662 {ECO:0000313|EMBL:BAI95478.1, ECO:0000313|Proteomes:UP000007753};
RN   [1] {ECO:0000313|EMBL:BAI95478.1, ECO:0000313|Proteomes:UP000007753}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 101211 / UT26S {ECO:0000313|Proteomes:UP000007753};
RX   PubMed=20817768; DOI=10.1128/JB.00961-10;
RA   Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A.,
RA   Fukui S., Fujita N., Tsuda M.;
RT   "Complete genome sequence of the representative gamma-
RT   hexachlorocyclohexane-degrading bacterium Sphingobium japonicum
RT   UT26.";
RL   J. Bacteriol. 192:5852-5853(2010).
CC   -!- FUNCTION: Located at the back of the 30S subunit body where it
CC       stabilizes the conformation of the head with respect to the body.
CC       {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00382364}.
CC   -!- FUNCTION: With S4 and S12 plays an important role in translational
CC       accuracy. {ECO:0000256|HAMAP-Rule:MF_01307,
CC       ECO:0000256|SAAS:SAAS00382324}.
CC   -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S4
CC       and S8. {ECO:0000256|HAMAP-Rule:MF_01307,
CC       ECO:0000256|SAAS:SAAS00085440}.
CC   -!- DOMAIN: The N-terminal domain interacts with the head of the 30S
CC       subunit; the C-terminal domain interacts with the body and
CC       contacts protein S4. The interaction surface between S4 and S5 is
CC       involved in control of translational fidelity. {ECO:0000256|HAMAP-
CC       Rule:MF_01307}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uS5 family.
CC       {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|RuleBase:RU003823,
CC       ECO:0000256|SAAS:SAAS00812081}.
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DR   EMBL; AP010803; BAI95478.1; -; Genomic_DNA.
DR   RefSeq; WP_013039176.1; NC_014006.1.
DR   STRING; 452662.SJA_C1-06440; -.
DR   EnsemblBacteria; BAI95478; BAI95478; SJA_C1-06440.
DR   GeneID; 29272317; -.
DR   KEGG; sjp:SJA_C1-06440; -.
DR   eggNOG; ENOG4108RA9; Bacteria.
DR   eggNOG; COG0098; LUCA.
DR   HOGENOM; HOG000072595; -.
DR   KO; K02988; -.
DR   OMA; KRGCGSW; -.
DR   OrthoDB; POG091H01QP; -.
DR   Proteomes; UP000007753; Chromosome 1.
DR   GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:UniProtKB-UniRule.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.30.230.10; -; 1.
DR   HAMAP; MF_01307_B; Ribosomal_S5_B; 1.
DR   InterPro; IPR000851; Ribosomal_S5.
DR   InterPro; IPR005712; Ribosomal_S5_bac-type.
DR   InterPro; IPR005324; Ribosomal_S5_C.
DR   InterPro; IPR020568; Ribosomal_S5_D2-typ_fold.
DR   InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr.
DR   InterPro; IPR013810; Ribosomal_S5_N.
DR   InterPro; IPR018192; Ribosomal_S5_N_CS.
DR   PANTHER; PTHR13718; PTHR13718; 1.
DR   Pfam; PF00333; Ribosomal_S5; 1.
DR   Pfam; PF03719; Ribosomal_S5_C; 1.
DR   SUPFAM; SSF54211; SSF54211; 1.
DR   TIGRFAMs; TIGR01021; rpsE_bact; 1.
DR   PROSITE; PS00585; RIBOSOMAL_S5; 1.
DR   PROSITE; PS50881; S5_DSRBD; 1.
PE   3: Inferred from homology;
DR   PRODOM; D4YYP6.
DR   SWISS-2DPAGE; D4YYP6.
KW   Complete proteome {ECO:0000313|Proteomes:UP000007753};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007753};
KW   Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01307,
KW   ECO:0000256|PROSITE-ProRule:PRU00268, ECO:0000256|RuleBase:RU003823,
KW   ECO:0000256|SAAS:SAAS00459550};
KW   Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01307,
KW   ECO:0000256|PROSITE-ProRule:PRU00268, ECO:0000256|RuleBase:RU003823,
KW   ECO:0000256|SAAS:SAAS00459469};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01307,
KW   ECO:0000256|SAAS:SAAS00085466};
KW   rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01307,
KW   ECO:0000256|SAAS:SAAS00085457}.
FT   DOMAIN       61    124       S5 DRBM. {ECO:0000259|PROSITE:PS50881}.
SQ   SEQUENCE   235 AA;  24580 MW;  655ED35E5C296925 CRC64;
     MADENEIQAQ PGAPAAVEGG EQTEGRRGRG RGGDRNRGER GGRGRRDDRR GNRDEEQGEE
     LIEKLVHINR VSKTVKGGKR FGFAALVVVG DGKGRAGFGH GKAREVPEAI SKATASAKKA
     MVRVPLKEGR TLHHDGLGHF GAGKVTVRSA PAGTGIIAGG PMRAVFESLG VADVVTKSNG
     TSNPYNMIRA TFAALGEQTS PKSVAQRRGK KVADLLRRGG ASAEVAQADA EAIAE
//

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