(data stored in SCRATCH zone)

SWISSPROT: D5EA55_METMS

ID   D5EA55_METMS            Unreviewed;       545 AA.
AC   D5EA55;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   11-DEC-2019, entry version 50.
DE   SubName: Full=DNA-directed RNA polymerase, subunit B {ECO:0000313|EMBL:ADE36056.1};
DE            EC=2.7.7.6 {ECO:0000313|EMBL:ADE36056.1};
GN   OrderedLocusNames=Mmah_0529 {ECO:0000313|EMBL:ADE36056.1};
OS   Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP).
OC   Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia;
OC   Methanosarcinales; Methanosarcinaceae; Methanohalophilus.
OX   NCBI_TaxID=547558 {ECO:0000313|EMBL:ADE36056.1, ECO:0000313|Proteomes:UP000001059};
RN   [1] {ECO:0000313|EMBL:ADE36056.1, ECO:0000313|Proteomes:UP000001059}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 35705 / DSM 5219 / SLP
RC   {ECO:0000313|Proteomes:UP000001059};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N.,
RA   Lykidis A., Saunders E., Brettin T., Detter J.C., Han C., Land M.,
RA   Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D.,
RA   Spring S., Schneider S., Schroeder M., Klenk H.-P., Eisen J.A.;
RT   "The complete genome of Methanohalophilus mahii DSM 5219.";
RL   Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC       {ECO:0000256|RuleBase:RU000434}.
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DR   EMBL; CP001994; ADE36056.1; -; Genomic_DNA.
DR   EnsemblBacteria; ADE36056; ADE36056; Mmah_0529.
DR   KEGG; mmh:Mmah_0529; -.
DR   eggNOG; arCOG01762; Archaea.
DR   eggNOG; COG0085; LUCA.
DR   HOGENOM; HOG000222951; -.
DR   KO; K03045; -.
DR   OMA; GKICPSE; -.
DR   BioCyc; MMAH547558:G1GHT-532-MONOMER; -.
DR   Proteomes; UP000001059; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 3.90.1110.10; -; 1.
DR   InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR   InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR   InterPro; IPR007642; RNA_pol_Rpb2_2.
DR   InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR   InterPro; IPR007645; RNA_pol_Rpb2_3.
DR   PANTHER; PTHR20856; PTHR20856; 1.
DR   Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR   Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR   Pfam; PF04565; RNA_pol_Rpb2_3; 1.
PE   3: Inferred from homology;
DR   PRODOM; D5EA55.
DR   SWISS-2DPAGE; D5EA55.
KW   DNA-directed RNA polymerase {ECO:0000313|EMBL:ADE36056.1};
KW   Nucleotidyltransferase {ECO:0000313|EMBL:ADE36056.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001059};
KW   Transcription {ECO:0000313|EMBL:ADE36056.1};
KW   Transferase {ECO:0000313|EMBL:ADE36056.1}.
FT   DOMAIN          16..383
FT                   /note="RNA_pol_Rpb2_1"
FT                   /evidence="ECO:0000259|Pfam:PF04563"
FT   DOMAIN          157..336
FT                   /note="RNA_pol_Rpb2_2"
FT                   /evidence="ECO:0000259|Pfam:PF04561"
FT   DOMAIN          404..467
FT                   /note="RNA_pol_Rpb2_3"
FT                   /evidence="ECO:0000259|Pfam:PF04565"
FT   REGION          509..545
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   545 AA;  61378 MW;  B5BC253F5D22FB43 CRC64;
     MDTSFLSEAY FTRDKIVQHH IDSYNKFLSS GLQKVIDEQH LIETDIEDIY VKLGRIRVEK
     PVVKEADGAI ENLYPNEARL RNLSYSAPLF LEMSVVKGGE ESEPREAKIG QLPVMIKSEI
     CNLVGIDDED MIEHGEDPLD PGGYFIVNGT ERVVMTLEDL APNKILAEIG ERYGDRIEVS
     KVFSQRRGYR ALVVVERGRK ALLEVSFPSI SGRINFITLL RALGIETDED VVKTVSTDPE
     IMKFMFENLE ESEVDTVEEA VEKIGMRVAS GQASEYQVKR ANYVIDRYLL PHLGNEPEDR
     VAKAHFLGRM AESCFELALG RRSADDKDHY SNKRLKLTGD LLEDLFRVAF NRLTRDVKYQ
     LERANMRNRE LNVSTLVRAD VLTDRLQHPL ATGNWVGGRS GVSQLLDRTD YISTLSHLRR
     VISPLSRAQP HFEARDLHST QWGRLCPSET PEGPNCGLVK NFAQMVELST GANDFDKVKN
     VLYGLGVAPA QLHVPEKILK YSNELGTDTE EHEMPVDDLI KSPGYQDITD DSDKKPLGNG
     GILGD
//

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