(data stored in SCRATCH zone)

SWISSPROT: D5URE1_TSUPD

ID   D5URE1_TSUPD            Unreviewed;       374 AA.
AC   D5URE1;
DT   13-JUL-2010, integrated into UniProtKB/TrEMBL.
DT   13-JUL-2010, sequence version 1.
DT   08-MAY-2019, entry version 38.
DE   SubName: Full=Diguanylate cyclase {ECO:0000313|EMBL:ADG76994.1};
GN   OrderedLocusNames=Tpau_0351 {ECO:0000313|EMBL:ADG76994.1};
OS   Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /
OS   NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).
OC   Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae;
OC   Tsukamurella.
OX   NCBI_TaxID=521096 {ECO:0000313|EMBL:ADG76994.1, ECO:0000313|Proteomes:UP000001213};
RN   [1] {ECO:0000313|Proteomes:UP000001213}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040
RC   {ECO:0000313|Proteomes:UP000001213};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E.,
RA   Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K.,
RA   Ivanova N., Mikhailova N., Munk A.C., Brettin T., Detter J.C.,
RA   Tapia R., Han C., Larimer F., Land M., Hauser L., Markowitz V.,
RA   Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Brambilla E.,
RA   Klenk H.-P., Eisen J.A.;
RT   "The complete chromosome of Tsukamurella paurometabola DSM 20162.";
RL   Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADG76994.1, ECO:0000313|Proteomes:UP000001213}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040
RC   {ECO:0000313|Proteomes:UP000001213};
RX   PubMed=21886861;
RA   Munk A.C., Lapidus A., Lucas S., Nolan M., Tice H., Cheng J.F.,
RA   Del Rio T.G., Goodwin L., Pitluck S., Liolios K., Huntemann M.,
RA   Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A.,
RA   Palaniappan K., Tapia R., Han C., Land M., Hauser L., Chang Y.J.,
RA   Jeffries C.D., Brettin T., Yasawong M., Brambilla E.M., Rohde M.,
RA   Sikorski J., Goker M., Detter J.C., Woyke T., Bristow J., Eisen J.A.,
RA   Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.;
RT   "Complete genome sequence of Tsukamurella paurometabola type strain
RT   (no. 33).";
RL   Stand. Genomic Sci. 4:342-351(2011).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001966; ADG76994.1; -; Genomic_DNA.
DR   RefSeq; WP_013125040.1; NC_014158.1.
DR   STRING; 521096.Tpau_0351; -.
DR   EnsemblBacteria; ADG76994; ADG76994; Tpau_0351.
DR   KEGG; tpr:Tpau_0351; -.
DR   eggNOG; ENOG4105BZU; Bacteria.
DR   eggNOG; ENOG410XNMH; LUCA.
DR   OMA; HGAWKDL; -.
DR   OrthoDB; 1635706at2; -.
DR   BioCyc; TPAU521096:G1GKO-334-MONOMER; -.
DR   Proteomes; UP000001213; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   CDD; cd01949; GGDEF; 1.
DR   InterPro; IPR000160; GGDEF_dom.
DR   InterPro; IPR029787; Nucleotide_cyclase.
DR   Pfam; PF00990; GGDEF; 1.
DR   SMART; SM00267; GGDEF; 1.
DR   SUPFAM; SSF55073; SSF55073; 1.
DR   TIGRFAMs; TIGR00254; GGDEF; 1.
DR   PROSITE; PS50887; GGDEF; 1.
PE   4: Predicted;
DR   PRODOM; D5URE1.
DR   SWISS-2DPAGE; D5URE1.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001213};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001213};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     39     62       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     68     88       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    100    116       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    122    143       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    148    166       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    172    191       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN      237    371       GGDEF. {ECO:0000259|PROSITE:PS50887}.
SQ   SEQUENCE   374 AA;  39261 MW;  F88702A79B26899F CRC64;
     MPDVSPDHGR ENLRTLVALW WRGGPSYDQR IAYLHNRSLL PMIRVVVSVC AALLGLMSIA
     LIPLVRPLTV VDVVRLTVCG AVALFWAVRW QLGEVPNARW ASVFVASSII AIYVASSTQN
     EPLAAALGVA SLAMIATFGA LILSTRAFLV NAALIFAAIA ASTLPVLPGY GWAQTLLGAA
     ILIGATIGVP ATMQFGMSFS WFDTAEAGTD PLTGAFNRRG LHTIWATWAM RRSPAAEHAA
     VIVVDLDRFK AVNDTHGHTA GDEMLVQVAR TLRSIGASVD ALVARLGGDE FALLVVGHDE
     AECTNLAHRI RRGIAAVPPV GASAVTASIG VAVDDAPATD PGLIDRLLAA ADEAMYQAKR
     TGDAVAVAPG NPVL
//

If you have problems or comments...

PBIL Back to PBIL home page