(data stored in SCRATCH zone)

SWISSPROT: D5USX3_TSUPD

ID   D5USX3_TSUPD            Unreviewed;       268 AA.
AC   D5USX3;
DT   13-JUL-2010, integrated into UniProtKB/TrEMBL.
DT   13-JUL-2010, sequence version 1.
DT   08-MAY-2019, entry version 59.
DE   SubName: Full=Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADG77260.1};
GN   OrderedLocusNames=Tpau_0622 {ECO:0000313|EMBL:ADG77260.1};
OS   Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /
OS   NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).
OC   Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae;
OC   Tsukamurella.
OX   NCBI_TaxID=521096 {ECO:0000313|EMBL:ADG77260.1, ECO:0000313|Proteomes:UP000001213};
RN   [1] {ECO:0000313|Proteomes:UP000001213}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040
RC   {ECO:0000313|Proteomes:UP000001213};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E.,
RA   Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K.,
RA   Ivanova N., Mikhailova N., Munk A.C., Brettin T., Detter J.C.,
RA   Tapia R., Han C., Larimer F., Land M., Hauser L., Markowitz V.,
RA   Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Brambilla E.,
RA   Klenk H.-P., Eisen J.A.;
RT   "The complete chromosome of Tsukamurella paurometabola DSM 20162.";
RL   Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADG77260.1, ECO:0000313|Proteomes:UP000001213}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040
RC   {ECO:0000313|Proteomes:UP000001213};
RX   PubMed=21886861;
RA   Munk A.C., Lapidus A., Lucas S., Nolan M., Tice H., Cheng J.F.,
RA   Del Rio T.G., Goodwin L., Pitluck S., Liolios K., Huntemann M.,
RA   Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A.,
RA   Palaniappan K., Tapia R., Han C., Land M., Hauser L., Chang Y.J.,
RA   Jeffries C.D., Brettin T., Yasawong M., Brambilla E.M., Rohde M.,
RA   Sikorski J., Goker M., Detter J.C., Woyke T., Bristow J., Eisen J.A.,
RA   Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.;
RT   "Complete genome sequence of Tsukamurella paurometabola type strain
RT   (no. 33).";
RL   Stand. Genomic Sci. 4:342-351(2011).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP001966; ADG77260.1; -; Genomic_DNA.
DR   RefSeq; WP_013125302.1; NC_014158.1.
DR   STRING; 521096.Tpau_0622; -.
DR   EnsemblBacteria; ADG77260; ADG77260; Tpau_0622.
DR   KEGG; tpr:Tpau_0622; -.
DR   eggNOG; ENOG4107HP6; Bacteria.
DR   eggNOG; COG1414; LUCA.
DR   HOGENOM; HOG000107041; -.
DR   KO; K02624; -.
DR   OMA; IQAVQSN; -.
DR   OrthoDB; 370329at2; -.
DR   BioCyc; TPAU521096:G1GKO-602-MONOMER; -.
DR   Proteomes; UP000001213; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0046278; P:3,4-dihydroxybenzoate metabolic process; IEA:InterPro.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR012794; PcaR_PcaU.
DR   InterPro; IPR014757; Tscrpt_reg_IclR_C.
DR   InterPro; IPR005471; Tscrpt_reg_IclR_N.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF09339; HTH_IclR; 1.
DR   Pfam; PF01614; IclR; 1.
DR   SMART; SM00346; HTH_ICLR; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   TIGRFAMs; TIGR02431; pcaR_pcaU; 1.
DR   PROSITE; PS51077; HTH_ICLR; 1.
DR   PROSITE; PS51078; ICLR_ED; 1.
PE   4: Predicted;
DR   PRODOM; D5USX3.
DR   SWISS-2DPAGE; D5USX3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001213};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001213}.
FT   DOMAIN       18     78       HTH iclR-type. {ECO:0000259|PROSITE:
FT                                PS51077}.
FT   DOMAIN       79    264       IclR-ED. {ECO:0000259|PROSITE:PS51078}.
SQ   SEQUENCE   268 AA;  28995 MW;  66C772DB9BFAF092 CRC64;
     MSPDRSEDVR PQAGDQYVQS LARGLEVIRA FDAEHQAMTL SEVASRTGLT RATARRFLLT
     LVELGYVRSD DRDFGLTPLV LQLGYAYLAG QPLPELAQPI LERLSHREQE STSLAVLDGT
     DIVYLTRVHT RRIMTVGISP GTRFPAYATS MGRVLLAAAD GDELDDYFAR ATLDPLTPRT
     LTTRAALEAE LARVRTQGYA MVDQELEVGL RSLAVPVPGR DGRPRAAINM ALSARLDGAD
     EPTVEHRVAA LSAAAADIAE AARAAGID
//

If you have problems or comments...

PBIL Back to PBIL home page