(data stored in SCRATCH zone)

SWISSPROT: E3J8P8_FRAIE

ID   E3J8P8_FRAIE            Unreviewed;       413 AA.
AC   E3J8P8;
DT   11-JAN-2011, integrated into UniProtKB/TrEMBL.
DT   11-JAN-2011, sequence version 1.
DT   16-JAN-2019, entry version 42.
DE   SubName: Full=Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP78491.1};
GN   OrderedLocusNames=FraEuI1c_0405 {ECO:0000313|EMBL:ADP78491.1};
OS   Frankia inefficax (strain DSM 45817 / CECT 9037 / EuI1c).
OC   Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.
OX   NCBI_TaxID=298654 {ECO:0000313|EMBL:ADP78491.1, ECO:0000313|Proteomes:UP000002484};
RN   [1] {ECO:0000313|EMBL:ADP78491.1, ECO:0000313|Proteomes:UP000002484}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 45817 / CECT 9037 / EuI1c
RC   {ECO:0000313|Proteomes:UP000002484};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA   Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N.,
RA   Beauchemin N., Sen A., Sur S.A., Gtari M., Wall L., Tisa L., Woyke T.;
RT   "Complete sequence of Frankia sp. EuI1c.";
RL   Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP002299; ADP78491.1; -; Genomic_DNA.
DR   RefSeq; WP_013421613.1; NC_014666.1.
DR   STRING; 298654.FraEuI1c_0405; -.
DR   EnsemblBacteria; ADP78491; ADP78491; FraEuI1c_0405.
DR   KEGG; fri:FraEuI1c_0405; -.
DR   eggNOG; ENOG4105CHP; Bacteria.
DR   eggNOG; COG4941; LUCA.
DR   HOGENOM; HOG000152991; -.
DR   OMA; VQWPEQG; -.
DR   OrthoDB; 1469807at2; -.
DR   BioCyc; FSP298654:G1GOT-406-MONOMER; -.
DR   Proteomes; UP000002484; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
PE   3: Inferred from homology;
DR   PRODOM; E3J8P8.
DR   SWISS-2DPAGE; E3J8P8.
KW   Complete proteome {ECO:0000313|Proteomes:UP000002484};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002484};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN        9     75       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      112    160       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   413 AA;  44635 MW;  128E35BBF46F0A99 CRC64;
     MTDARIEDLL RELAPQVLGV LTRRYGRFDA CEDATQEALL KAARRWPTDG IPENPGGWLQ
     TVAYRVLVDE LRRDGSRRRR EEAAYASTPQ SQALAGLHEA GQHDDSLELF FLCCHPSLST
     PSQIALTLRA VGGLTTTQIA GAFLVPETTM AQRISRAKAT IEAGGRRLEM PGRAAGERLS
     TVQHVLYLIF NEGYTATTGA DLMVPSLSDE AIRLTRLLRR LLPADGETAG LLALMLLTDA
     RRPARTRGDG SLVPLAEQDR SLWTSALIAE GLALISQVLP VGKVGPYQLQ AAIAAVYVEA
     PTMDETDWPQ ILALYDLLER AAPNPMTTLN RAVAVAMVHG PAAGLDIVSS LETDGRLARS
     HRILATRAHL RQRAGDRDAA AADYRQAAAL TASIPERRYL IGRAVALGTD GDG
//

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