(data stored in SCRATCH zone)

SWISSPROT: E6UXU5_VARPE

ID   E6UXU5_VARPE            Unreviewed;       314 AA.
AC   E6UXU5;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 49.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU34289.1};
GN   OrderedLocusNames=Varpa_0066 {ECO:0000313|EMBL:ADU34289.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34289.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34289.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34289.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|SAAS:SAAS01096700}.
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DR   EMBL; CP002417; ADU34289.1; -; Genomic_DNA.
DR   RefSeq; WP_013538536.1; NC_014931.1.
DR   STRING; 595537.Varpa_0066; -.
DR   EnsemblBacteria; ADU34289; ADU34289; Varpa_0066.
DR   GeneID; 29715462; -.
DR   KEGG; vpe:Varpa_0066; -.
DR   eggNOG; ENOG4107R11; Bacteria.
DR   eggNOG; ENOG410XP61; LUCA.
DR   HOGENOM; HOG000260068; -.
DR   KO; K13635; -.
DR   OMA; IVLTAMD; -.
DR   OrthoDB; 990666at2; -.
DR   BioCyc; VPAR595537:G1GQO-66-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   CDD; cd08413; PBP2_CysB_like; 1.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR037423; CysB_PBP2.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   PRINTS; PR00039; HTHLYSR.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
DR   PRODOM; E6UXU5.
DR   SWISS-2DPAGE; E6UXU5.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|SAAS:SAAS01096662};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transcription {ECO:0000256|SAAS:SAAS01096725};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS01096646}.
FT   DOMAIN        1     59       HTH lysR-type. {ECO:0000259|PROSITE:
FT                                PS50931}.
SQ   SEQUENCE   314 AA;  34581 MW;  CEC4264512C99CAC CRC64;
     MNFQQLRSVR EAVRCGFNLT EVAHTLHTSQ PGVSRQIREL EEELGIELFV RAGKRLTGLT
     EPGGHVLPII ERMLLESSNL RHAGQEFVAQ QSGLLSIAAT HSQARYAMPV AVQEFRAQFP
     NVKLHLHQGS PKQIAQMLID GEADVGIATE ALGDYPQLVA LPCYRWTHSV IVPPGHPLLD
     APLSLEALTR YPLITYDTGF TGRSRIDEAF EARGLQPNIV LAAMDADVIK TYVTLGLGVG
     IVAGVAYEAE RDTQLRAIDA GRLFGINLTK LAVRRGNYLR KYVYAFIESF APTLTRAIVE
     KALGDEAKAS HYEI
//

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