(data stored in SCRATCH zone)

SWISSPROT: E6UYY8_VARPE

ID   E6UYY8_VARPE            Unreviewed;       303 AA.
AC   E6UYY8;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 48.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU34317.1};
GN   OrderedLocusNames=Varpa_0095 {ECO:0000313|EMBL:ADU34317.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34317.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34317.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34317.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|SAAS:SAAS01096700}.
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DR   EMBL; CP002417; ADU34317.1; -; Genomic_DNA.
DR   RefSeq; WP_013538564.1; NC_014931.1.
DR   STRING; 595537.Varpa_0095; -.
DR   EnsemblBacteria; ADU34317; ADU34317; Varpa_0095.
DR   GeneID; 29716759; -.
DR   KEGG; vpe:Varpa_0095; -.
DR   eggNOG; ENOG4106Q2E; Bacteria.
DR   eggNOG; ENOG410XPEE; LUCA.
DR   HOGENOM; HOG000233519; -.
DR   OMA; LCAVTQY; -.
DR   OrthoDB; 1661500at2; -.
DR   BioCyc; VPAR595537:G1GQO-92-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   PRINTS; PR00039; HTHLYSR.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
DR   PRODOM; E6UYY8.
DR   SWISS-2DPAGE; E6UYY8.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|SAAS:SAAS01096662};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transcription {ECO:0000256|SAAS:SAAS01096725};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS01096646}.
FT   DOMAIN        8     65       HTH lysR-type. {ECO:0000259|PROSITE:
FT                                PS50931}.
FT   COILED       75     95       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   303 AA;  33610 MW;  828324509BD39D2D CRC64;
     MQRQFGDILL GSIELFCLAA ETGGFTSAAL AAGVTPAAVS RSISRLEKRL GLRLFVRTTR
     SVRLTDAGRS YFAQCRQALA QLAEAEREVM GQQAQPSGTL RISVPTTYGH HRILPMLPAF
     RERYPDIRLH VHLSNRNIDF VEEGYDMAVR VRAQPDSTLI ARHLEDAALV VVATRKYLKA
     AGTPRTPDDL AAHECIQFEL PSSGRRISWL FKEEGQDREV LADSAYSCSD DVLGGVTLAK
     SGAGLFQTYR FVVQKELADG SLVEVLKPFA GRSRPYTLLY PDGRHAPLRM RVFIDFLMAQ
     RAA
//

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