(data stored in SCRATCH zone)

SWISSPROT: E6UZ36_VARPE

ID   E6UZ36_VARPE            Unreviewed;       317 AA.
AC   E6UZ36;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 46.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU34365.1};
GN   OrderedLocusNames=Varpa_0143 {ECO:0000313|EMBL:ADU34365.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34365.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34365.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34365.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|SAAS:SAAS01096700}.
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DR   EMBL; CP002417; ADU34365.1; -; Genomic_DNA.
DR   RefSeq; WP_013538612.1; NC_014931.1.
DR   STRING; 595537.Varpa_0143; -.
DR   EnsemblBacteria; ADU34365; ADU34365; Varpa_0143.
DR   GeneID; 29718291; -.
DR   KEGG; vpe:Varpa_0143; -.
DR   eggNOG; ENOG4105FT2; Bacteria.
DR   eggNOG; ENOG410XSC3; LUCA.
DR   HOGENOM; HOG000233522; -.
DR   OMA; TWVAMHE; -.
DR   OrthoDB; 1661500at2; -.
DR   BioCyc; VPAR595537:G1GQO-141-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   PRINTS; PR00039; HTHLYSR.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
DR   PRODOM; E6UZ36.
DR   SWISS-2DPAGE; E6UZ36.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|SAAS:SAAS01096662};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transcription {ECO:0000256|SAAS:SAAS01096725};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS01096646}.
FT   DOMAIN        5     62       HTH lysR-type. {ECO:0000259|PROSITE:
FT                                PS50931}.
SQ   SEQUENCE   317 AA;  34293 MW;  AF38706D5AE7AABD CRC64;
     MTSNIGWELY RSFLGVLREG SLSGAARALG ITQPTVGRHV AALEAALGVV LFTRSQVGLM
     PTEVALALQG HAEAMESTAA SLERAATSQG EEGGKIRGVV RISASEVIGV EVLPPIVARL
     REAHPALKVE LVLTNRVQDL LRREADIAVR MVRPKQEQLV ARRVGQIELG FHARKDYLAR
     RGTPRKQEDL AAHAVIGYDQ PSAFVRNAGK ALPGYGRDAF SLRTDSDLAQ LALIRAGAGI
     GICQAGLARR DAALVRLMPR AFSMKLETWI TMHEDLRNSP RCRVAFDALV DGLQAYIDPP
     VQGTRGKIGR ARTQASE
//

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