(data stored in SCRATCH zone)

SWISSPROT: E6V093_VARPE

ID   E6V093_VARPE            Unreviewed;       256 AA.
AC   E6V093;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 49.
DE   SubName: Full=Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADU34407.1};
GN   OrderedLocusNames=Varpa_0185 {ECO:0000313|EMBL:ADU34407.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34407.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34407.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34407.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002417; ADU34407.1; -; Genomic_DNA.
DR   STRING; 595537.Varpa_0185; -.
DR   EnsemblBacteria; ADU34407; ADU34407; Varpa_0185.
DR   KEGG; vpe:Varpa_0185; -.
DR   eggNOG; ENOG4108SEB; Bacteria.
DR   eggNOG; COG1414; LUCA.
DR   HOGENOM; HOG000218255; -.
DR   OMA; CSFEKGR; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR014757; Tscrpt_reg_IclR_C.
DR   InterPro; IPR005471; Tscrpt_reg_IclR_N.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF09339; HTH_IclR; 1.
DR   Pfam; PF01614; IclR; 1.
DR   SMART; SM00346; HTH_ICLR; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS51077; HTH_ICLR; 1.
DR   PROSITE; PS51078; ICLR_ED; 1.
PE   4: Predicted;
DR   PRODOM; E6V093.
DR   SWISS-2DPAGE; E6V093.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917}.
FT   DOMAIN       20     80       HTH iclR-type. {ECO:0000259|PROSITE:
FT                                PS51077}.
FT   DOMAIN       81    256       IclR-ED. {ECO:0000259|PROSITE:PS51078}.
SQ   SEQUENCE   256 AA;  27297 MW;  D56F318F8766AC4D CRC64;
     MEVRTASKIL PAMTPPTDAP AHNDRALFVL SVLAQSKVAM TAAELVQATG LVKSTLYRQI
     ATLRRWGFVM ESDGRYSPGP VSVQLASGFD DNSDLVMAAR ADMRALVQQS HESVALVTAV
     NDRVVCLEMI DSEHSLRCSF DRGRSVPASD GASAKCLLAH MPLDQRDALL DGLGESAQRR
     AERAAELDAI REAGHAVTEG EVDAGVWGAS APVLASGRRL RGAITLMAPI TRVQGMEAAL
     LHMTVVTAAR ISRALQ
//

If you have problems or comments...

PBIL Back to PBIL home page