(data stored in SCRATCH zone)

SWISSPROT: E6V286_VARPE

ID   E6V286_VARPE            Unreviewed;       173 AA.
AC   E6V286;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 39.
DE   SubName: Full=Rod shape-determining protein MreD {ECO:0000313|EMBL:ADU34517.1};
GN   OrderedLocusNames=Varpa_0295 {ECO:0000313|EMBL:ADU34517.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34517.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34517.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34517.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002417; ADU34517.1; -; Genomic_DNA.
DR   RefSeq; WP_013538763.1; NC_014931.1.
DR   STRING; 595537.Varpa_0295; -.
DR   EnsemblBacteria; ADU34517; ADU34517; Varpa_0295.
DR   GeneID; 29718453; -.
DR   KEGG; vpe:Varpa_0295; -.
DR   eggNOG; ENOG4108YWV; Bacteria.
DR   eggNOG; COG2891; LUCA.
DR   HOGENOM; HOG000266108; -.
DR   KO; K03571; -.
DR   OMA; HRRLLWF; -.
DR   OrthoDB; 1888959at2; -.
DR   BioCyc; VPAR595537:G1GQO-297-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0008360; P:regulation of cell shape; IEA:InterPro.
DR   InterPro; IPR007227; Cell_shape_determining_MreD.
DR   InterPro; IPR026034; MreD_proteobac.
DR   PANTHER; PTHR37484; PTHR37484; 1.
DR   Pfam; PF04093; MreD; 1.
DR   PIRSF; PIRSF018472; MreD_proteobac; 1.
DR   TIGRFAMs; TIGR03426; shape_MreD; 1.
PE   4: Predicted;
DR   PRODOM; E6V286.
DR   SWISS-2DPAGE; E6V286.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM     12     30       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    100    122       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM    134    159       Helical. {ECO:0000256|SAM:Phobius}.
SQ   SEQUENCE   173 AA;  19040 MW;  B7035F0762DF671F CRC64;
     MIKRPGQQQL LLPVSPLFMW TSLVVALLVN MIPIGRAAWM PDLLALVIVF WGVHQPSRVG
     IGAAFVFGLC MDVHQASMLG QHALSYTTLG FFAITIHRRL LWYPVLSQAL QVLPLFALSQ
     LIEVITRMIG GGVFPGWSVL ISPGVEAALW PLASALLLAP QRRTPEPDEN RPL
//

If you have problems or comments...

PBIL Back to PBIL home page