(data stored in SCRATCH zone)

SWISSPROT: E6V4F2_VARPE

ID   E6V4F2_VARPE            Unreviewed;       308 AA.
AC   E6V4F2;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 45.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU34698.1};
GN   OrderedLocusNames=Varpa_0476 {ECO:0000313|EMBL:ADU34698.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34698.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34698.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34698.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|SAAS:SAAS01096700}.
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DR   EMBL; CP002417; ADU34698.1; -; Genomic_DNA.
DR   RefSeq; WP_013538944.1; NC_014931.1.
DR   STRING; 595537.Varpa_0476; -.
DR   EnsemblBacteria; ADU34698; ADU34698; Varpa_0476.
DR   GeneID; 29714779; -.
DR   KEGG; vpe:Varpa_0476; -.
DR   HOGENOM; HOG000233519; -.
DR   OMA; PMTLSRW; -.
DR   OrthoDB; 1661500at2; -.
DR   BioCyc; VPAR595537:G1GQO-477-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
DR   PRODOM; E6V4F2.
DR   SWISS-2DPAGE; E6V4F2.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|SAAS:SAAS01096662};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transcription {ECO:0000256|SAAS:SAAS01096725};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS01096646}.
FT   DOMAIN        1     59       HTH lysR-type. {ECO:0000259|PROSITE:
FT                                PS50931}.
SQ   SEQUENCE   308 AA;  33683 MW;  89292D941B183CBE CRC64;
     MDRLKQLESF VSVATRGSLT AAAKAEGVAP AIMGRRLDAL EERLGVKLLV RTTRRITLTH
     EGSAFLEDCQ RLLTEFQNAE ASVSAGGVKA SGHLRVTAPA GFGRRHVAPL VPRFHALHPE
     VTISLNLSDR VVDVTGESFD CAVRVGDLPD SSLVSVRLAD NRRRCVATPD FLRRHGTPKH
     PGELSRFACL TLSSDASQTR GWAFRVTTEA GVEELIHLRP SGPLDCSDGQ VLHDWCLAGH
     GIAWRSTWEV EAEIDAGLLV PVLDEFAAPP NGIYAVFAGA KHLPLRVRLW LDFLKDQYGQ
     PEFWGRTA
//

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