(data stored in SCRATCH zone)

SWISSPROT: E6V4G0_VARPE

ID   E6V4G0_VARPE            Unreviewed;       529 AA.
AC   E6V4G0;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 52.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   OrderedLocusNames=Varpa_0484 {ECO:0000313|EMBL:ADU34706.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34706.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34706.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34706.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|PIRNR:PIRNR000774}.
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DR   EMBL; CP002417; ADU34706.1; -; Genomic_DNA.
DR   RefSeq; WP_013538952.1; NC_014931.1.
DR   STRING; 595537.Varpa_0484; -.
DR   EnsemblBacteria; ADU34706; ADU34706; Varpa_0484.
DR   GeneID; 29717741; -.
DR   KEGG; vpe:Varpa_0484; -.
DR   eggNOG; ENOG4105DTW; Bacteria.
DR   eggNOG; COG1508; LUCA.
DR   HOGENOM; HOG000071905; -.
DR   KO; K03092; -.
DR   OMA; VTTQKFM; -.
DR   OrthoDB; 1906842at2; -.
DR   BioCyc; VPAR595537:G1GQO-485-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.1330; -; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; PTHR32248; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; E6V4G0.
DR   SWISS-2DPAGE; E6V4G0.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000774};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Sigma factor {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN      150    357       Sigma54_CBD. {ECO:0000259|Pfam:PF04963}.
FT   DOMAIN      371    527       Sigma54_DBD. {ECO:0000259|Pfam:PF04552}.
FT   COILED       37     57       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   529 AA;  58525 MW;  8570917AF276B828 CRC64;
     MKQGLSLRVS QHLALTPQLQ QSIRLLQLST LELSQEVEQM LDENPFLERT AEEAAREEFG
     LDAVDTPVPR DDGGETGEGD FAPVSTSSAT TTTETSSTPD SDGPAAEITE REPDWEGDGT
     VDMAPDDSEW GSDAPARQNN LGDDERADAT ELARSQESLQ SFLHRQALSL RLNENDSAAL
     RFLIESLNDD GYLEDSLPAL ASGLAGDDND QFDDLVHHFQ VALGLLQSLE PAGVGARDLG
     ECLGIQLRAL ASEDETEDEE LIRKTAIAIC KQPMELLARR DFKRLATLTR TNEELVRSAL
     QIIARLEPKP GRRFVDVERN IVIPDVIVTK TGRGTNIKFR VMLNPEVMPR LRVHDIYAGA
     LKSHKGEGSQ ALSQRLQEAR WFIKNIQQRF DTILRVSNAI VERQKSYFVH GELAMRPLVL
     REIADELGLH ESTISRVTTA KYMSTPFGTV ELKYFFGSAL GTETGGNASS TAVRALIKQF
     VSSESIKKPL SDSQISEMLK EQGIECARRT VAKYREALRI APANLRKAL
//

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