(data stored in SCRATCH zone)

SWISSPROT: E6V5C9_VARPE

ID   E6V5C9_VARPE            Unreviewed;       298 AA.
AC   E6V5C9;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   08-MAY-2019, entry version 47.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU34735.1};
GN   OrderedLocusNames=Varpa_0514 {ECO:0000313|EMBL:ADU34735.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU34735.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Orwin P.,
RA   Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU34735.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU34735.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium
RT   Variovorax paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-13(2013).
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|SAAS:SAAS01096700}.
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DR   EMBL; CP002417; ADU34735.1; -; Genomic_DNA.
DR   RefSeq; WP_013538981.1; NC_014931.1.
DR   STRING; 595537.Varpa_0514; -.
DR   EnsemblBacteria; ADU34735; ADU34735; Varpa_0514.
DR   GeneID; 29719058; -.
DR   KEGG; vpe:Varpa_0514; -.
DR   eggNOG; ENOG4105FT2; Bacteria.
DR   eggNOG; ENOG410XSC3; LUCA.
DR   HOGENOM; HOG000233522; -.
DR   OMA; AFMAQEH; -.
DR   OrthoDB; 1661500at2; -.
DR   BioCyc; VPAR595537:G1GQO-516-MONOMER; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   PRINTS; PR00039; HTHLYSR.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
DR   PRODOM; E6V5C9.
DR   SWISS-2DPAGE; E6V5C9.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008917};
KW   DNA-binding {ECO:0000256|SAAS:SAAS01096662};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008917};
KW   Transcription {ECO:0000256|SAAS:SAAS01096725};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS01096646}.
FT   DOMAIN        9     66       HTH lysR-type. {ECO:0000259|PROSITE:
FT                                PS50931}.
SQ   SEQUENCE   298 AA;  32907 MW;  A0FF7F325294A309 CRC64;
     MGLDSNLDFD WRLVRAFLAA LDHGSLLAAS RALGSSQPTL GRHIAELETQ LGVVLFERTG
     RGLRPTAMAA RLAESARAME SGAVSLSRSV SGANAATAGT VRISASQATA RQMLPALLVR
     MRQELPEIQV ELVSTNEVSN LLRREADIAI RMTEPTTATV VARRIGRFAL GAFAQADYLR
     RRGTPRQTAD LLRHDVLGYD RIDTIVRMSA QLGTPLQRED FCFRTDDMGA YWEALRQGMG
     IGFVSESLAR TDSQVQRVLP QLKIPSLPVW LAVHREIRTD RRIRAVYDFL ARNIPASI
//

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