(data stored in SCRATCH zone)

SWISSPROT: Q0SKA3_RHOJR

ID   Q0SKA3_RHOJR            Unreviewed;       379 AA.
AC   Q0SKA3;
DT   05-SEP-2006, integrated into UniProtKB/TrEMBL.
DT   05-SEP-2006, sequence version 1.
DT   07-JUN-2017, entry version 80.
DE   SubName: Full=Probable sigma factor, includes region 2 {ECO:0000313|EMBL:ABG92033.1};
GN   OrderedLocusNames=RHA1_ro00197 {ECO:0000313|EMBL:ABG92033.1};
OS   Rhodococcus jostii (strain RHA1).
OC   Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
OC   Rhodococcus.
OX   NCBI_TaxID=101510 {ECO:0000313|EMBL:ABG92033.1, ECO:0000313|Proteomes:UP000008710};
RN   [1] {ECO:0000313|Proteomes:UP000008710}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RHA1 {ECO:0000313|Proteomes:UP000008710};
RX   PubMed=17030794; DOI=10.1073/pnas.0607048103;
RA   McLeod M.P., Warren R.L., Hsiao W.W.L., Araki N., Myhre M.,
RA   Fernandes C., Miyazawa D., Wong W., Lillquist A.L., Wang D.,
RA   Dosanjh M., Hara H., Petrescu A., Morin R.D., Yang G., Stott J.M.,
RA   Schein J.E., Shin H., Smailus D., Siddiqui A.S., Marra M.A.,
RA   Jones S.J.M., Holt R., Brinkman F.S.L., Miyauchi K., Fukuda M.,
RA   Davies J.E., Mohn W.W., Eltis L.D.;
RT   "The complete genome of Rhodococcus sp. RHA1 provides insights into a
RT   catabolic powerhouse.";
RL   Proc. Natl. Acad. Sci. U.S.A. 103:15582-15587(2006).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS00565917}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000431; ABG92033.1; -; Genomic_DNA.
DR   ProteinModelPortal; Q0SKA3; -.
DR   STRING; 101510.RHA1_ro00197; -.
DR   PRIDE; Q0SKA3; -.
DR   EnsemblBacteria; ABG92033; ABG92033; RHA1_ro00197.
DR   KEGG; rha:RHA1_ro00197; -.
DR   eggNOG; ENOG4108QP2; Bacteria.
DR   eggNOG; COG1595; LUCA.
DR   HOGENOM; HOG000220479; -.
DR   KO; K03088; -.
DR   OMA; RELHAHC; -.
DR   OrthoDB; POG091H04ZH; -.
DR   BioCyc; RJOS101510:GJJ1-197-MONOMER; -.
DR   Proteomes; UP000008710; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR009959; Cyclase_SnoaL-like_dom.
DR   InterPro; IPR032710; NTF2-like_dom.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014305; RNA_pol_sigma-G_actinobac.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   Pfam; PF12680; SnoaL_2; 1.
DR   SUPFAM; SSF54427; SSF54427; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   TIGRFAMs; TIGR02960; SigX5; 1.
PE   3: Inferred from homology;
DR   PRODOM; Q0SKA3.
DR   SWISS-2DPAGE; Q0SKA3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000008710};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008710};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       65    131       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      186    234       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
FT   DOMAIN      263    358       Cyclase_SnoaL-like_dom.
FT                                {ECO:0000259|Pfam:PF12680}.
SQ   SEQUENCE   379 AA;  40811 MW;  69E6A74DF4DD73B0 CRC64;
     MLAPRRRAVD RCSRTGVGPT TGGRAESFLV TDMSARTPDA AAADAEAADL ARARDGDDAA
     FTRLVGPLRR ELHAHCYRML GSSHDADDAL QDALLRAWRG FARFEGRSTL RSWLYTVATR
     TCLDAVESRG RRALPVDLGP SSDRAVIGDV PLTDVAWLGP YADAGLTAGS AGPAARYEQR
     EAVELAFVAA LQHLPGNQRA ALLLFEVLGF SAAEIADTMN TSTASVNSAL QRARTIVAEK
     IPPVTQAHTV REIDDARLRA IVAGYSTALE RGDADALVAL LTEDVTWSMP PMAHWYRGLD
     AVTDFAVRVP LTGCGSWRHL PVGANGQPAV AFYLWDEDAG THLRWSITVL TLRGTKIADL
     TSFLGPEHFD PFGLPESLP
//

If you have problems or comments...

PBIL Back to PBIL home page